Literature DB >> 15213424

Measurement of scaled residual dipolar couplings in proteins using variable-angle sample spinning.

Nathalie Lancelot1, Karim Elbayed, Alberto Bianco, Martial Piotto.   

Abstract

NMR spectra of ubiquitin in the presence of bicelles at a concentration of 25% w/v have been recorded under sample spinning conditions for different angles of rotation. For an axis of rotation equal to the magic angle, the (1)H/(15)N HSQC recorded without any (1)H decoupling in the indirect dimension corresponds to the classical spectrum obtained on a protein in an isotropic solution and allows the measurement of scalar J-couplings (1) J (NH). For an angle of rotation smaller than the magic angle, the bicelles orient with their normal perpendicular to the spinning axis, whereas for an angle of rotation greater than the magic angle the bicelles orient with their normal along the spinning axis. This bicelle alignment creates anisotropic conditions that give rise to the observation of residual dipolar couplings in ubiquitin. The magnitude of these dipolar couplings depends directly on the angle that the rotor makes with the main magnetic field. By changing this angle in a controlled manner, residual dipolar couplings can be either scaled up or down thus offering the possibility to study simultaneously a wide range of dipolar couplings in the same sample.

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Year:  2004        PMID: 15213424     DOI: 10.1023/B:JNMR.0000032548.60663.1f

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  14 in total

1.  Sign determination of dipolar couplings in field-oriented bicelles by variable angle sample spinning (VASS).

Authors:  F Tian; J A Losonczi; M W Fischer; J H Prestegard
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

Review 2.  NMR structures of biomolecules using field oriented media and residual dipolar couplings.

Authors:  J H Prestegard; H M al-Hashimi; J R Tolman
Journal:  Q Rev Biophys       Date:  2000-11       Impact factor: 5.318

3.  Solution NMR of proteins within polyacrylamide gels: diffusional properties and residual alignment by mechanical stress or embedding of oriented purple membranes.

Authors:  H J Sass; G Musco; S J Stahl; P T Wingfield; S Grzesiek
Journal:  J Biomol NMR       Date:  2000-12       Impact factor: 2.835

4.  Switched-angle spinning applied to bicelles containing phospholipid-associated peptides.

Authors:  Giorgia Zandomeneghi; Philip T F Williamson; Andreas Hunkeler; Beat H Meier
Journal:  J Biomol NMR       Date:  2003-02       Impact factor: 2.835

5.  High-resolution heteronuclear NMR of human ubiquitin in an aqueous liquid crystalline medium.

Authors:  A Bax; N Tjandra
Journal:  J Biomol NMR       Date:  1997-10       Impact factor: 2.835

6.  Line narrowing in spectra of proteins dissolved in a dilute liquid crystalline phase by band-selective adiabatic decoupling: application to 1HN-15N residual dipolar coupling measurements.

Authors:  C W Vander Kooi; E Kupce; E R Zuiderweg; M Pellecchia
Journal:  J Biomol NMR       Date:  1999-12       Impact factor: 2.835

7.  Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions.

Authors:  M R Hansen; L Mueller; A Pardi
Journal:  Nat Struct Biol       Date:  1998-12

8.  Characterization of magnetically orientable bilayers in mixtures of dihexanoylphosphatidylcholine and dimyristoylphosphatidylcholine by solid-state NMR.

Authors:  C R Sanders; J P Schwonek
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

9.  NMR of bicelles: orientation and mosaic spread of the liquid-crystal director under sample rotation.

Authors:  Giorgia Zandomeneghi; Marco Tomaselli; Philip T F Williamson; Beat H Meier
Journal:  J Biomol NMR       Date:  2003-02       Impact factor: 2.835

10.  Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution.

Authors:  J R Tolman; J M Flanagan; M A Kennedy; J H Prestegard
Journal:  Proc Natl Acad Sci U S A       Date:  1995-09-26       Impact factor: 11.205

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  5 in total

1.  Bicelle-enabled structural studies on a membrane-associated cytochrome B5 by solid-state MAS NMR spectroscopy.

Authors:  Jiadi Xu; Ulrich H N Dürr; Sang-Choul Im; Zhehong Gan; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

2.  Applications of variable-angle sample spinning experiments to the measurement of scaled residual dipolar couplings and 15N CSA in soluble proteins.

Authors:  Nathalie Lancelot; Karim Elbayed; Martial Piotto
Journal:  J Biomol NMR       Date:  2005-11       Impact factor: 2.835

Review 3.  Spatial reorientation experiments for NMR of solids and partially oriented liquids.

Authors:  Rachel W Martin; John E Kelly; Kelsey A Collier
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-10-23       Impact factor: 9.795

Review 4.  Bicelles: A natural 'molecular goniometer' for structural, dynamical and topological studies of molecules in membranes.

Authors:  Anna Diller; Cécile Loudet; Fabien Aussenac; Gérard Raffard; Sylvie Fournier; Michel Laguerre; Axelle Grélard; Stanley J Opella; Francesca M Marassi; Erick J Dufourc
Journal:  Biochimie       Date:  2009-02-25       Impact factor: 4.079

Review 5.  The magic of bicelles lights up membrane protein structure.

Authors:  Ulrich H N Dürr; Melissa Gildenberg; Ayyalusamy Ramamoorthy
Journal:  Chem Rev       Date:  2012-08-24       Impact factor: 60.622

  5 in total

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