Literature DB >> 15213385

Structure of an aryl esterase from Pseudomonas fluorescens.

Jeremy D Cheeseman1, Ante Tocilj, Seongsoon Park, Joseph D Schrag, Romas J Kazlauskas.   

Abstract

The structure of PFE, an aryl esterase from Pseudomonas fluorescens, has been solved to a resolution of 1.8 A by X-ray diffraction and shows a characteristic alpha/beta-hydrolase fold. In addition to catalyzing the hydrolysis of esters in vitro, PFE also shows low bromoperoxidase activity. PFE shows highest structural similarity, including the active-site environment, to a family of non-heme bacterial haloperoxidases, with an r.m.s. deviation in 271 C(alpha) atoms between PFE and its five closest structural neighbors averaging 0.8 A. PFE has far less similarity (r.m.s. deviation in 218 C(alpha) atoms of 5.0 A) to P. fluorescens carboxyl esterase. PFE favors activated esters with small acyl groups, such as phenyl acetate. The X-ray structure of PFE reveals a significantly occluded active site. In addition, several residues, including Trp28 and Met95, limit the size of the acyl-binding pocket, explaining its preference for small acyl groups.

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Year:  2004        PMID: 15213385     DOI: 10.1107/S0907444904010522

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  17 in total

1.  Stereoselective esterase from Pseudomonas putida IFO12996 reveals alpha/beta hydrolase folds for D-beta-acetylthioisobutyric acid synthesis.

Authors:  Fatemeh Elmi; Hsin-Tai Lee; Jen-Yeng Huang; Yin-Cheng Hsieh; Yu-Ling Wang; Yu-Jen Chen; Shyh-Yu Shaw; Chun-Jung Chen
Journal:  J Bacteriol       Date:  2005-12       Impact factor: 3.490

2.  Crystallization and preliminary X-ray analysis of a highly stable novel SGNH hydrolase (Est24) from Sinorhizobium meliloti.

Authors:  Bum Han Ryu; Duy Duc Nguyen; Tri Duc Ngo; Changsuk Oh; Ramesh Pandian; Kyeong Kyu Kim; T Doohun Kim
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-21       Impact factor: 1.056

3.  Switching catalysis from hydrolysis to perhydrolysis in Pseudomonas fluorescens esterase.

Authors:  De Lu Tyler Yin; Peter Bernhardt; Krista L Morley; Yun Jiang; Jeremy D Cheeseman; Vincent Purpero; Joseph D Schrag; Romas J Kazlauskas
Journal:  Biochemistry       Date:  2010-03-09       Impact factor: 3.162

4.  New structural motif for carboxylic acid perhydrolases.

Authors:  DeLu Tyler Yin; Vince M Purpero; Ryota Fujii; Qing Jing; Romas J Kazlauskas
Journal:  Chemistry       Date:  2013-01-16       Impact factor: 5.236

5.  Structure determination and characterization of the vitamin B6 degradative enzyme (E)-2-(acetamidomethylene)succinate hydrolase.

Authors:  Kathryn M McCulloch; Tathagata Mukherjee; Tadhg P Begley; Steven E Ealick
Journal:  Biochemistry       Date:  2010-02-16       Impact factor: 3.162

6.  Role of the NC-loop in catalytic activity and stability in lipase from Fervidobacterium changbaicum.

Authors:  Binchun Li; Guangyu Yang; Lie Wu; Yan Feng
Journal:  PLoS One       Date:  2012-10-08       Impact factor: 3.240

7.  Structure-based functional annotation of hypothetical proteins from Candida dubliniensis: a quest for potential drug targets.

Authors:  Kundan Kumar; Amresh Prakash; Farah Anjum; Asimul Islam; Faizan Ahmad; Md Imtaiyaz Hassan
Journal:  3 Biotech       Date:  2014-10-17       Impact factor: 2.406

8.  Mining bacterial genomes for novel arylesterase activity.

Authors:  Lijun Wang; Valentina Mavisakalyan; Elisabeth R M Tillier; Greg W Clark; Alexei V Savchenko; Alexander F Yakunin; Emma R Master
Journal:  Microb Biotechnol       Date:  2010-11       Impact factor: 5.813

9.  Multifunctionality and diversity of GDSL esterase/lipase gene family in rice (Oryza sativa L. japonica) genome: new insights from bioinformatics analysis.

Authors:  Hanna Chepyshko; Chia-Ping Lai; Li-Ming Huang; Jyung-Hurng Liu; Jei-Fu Shaw
Journal:  BMC Genomics       Date:  2012-07-15       Impact factor: 3.969

10.  Est16, a New Esterase Isolated from a Metagenomic Library of a Microbial Consortium Specializing in Diesel Oil Degradation.

Authors:  Mariana Rangel Pereira; Gustavo Fernando Mercaldi; Thaís Carvalho Maester; Andrea Balan; Eliana Gertrudes de Macedo Lemos
Journal:  PLoS One       Date:  2015-07-27       Impact factor: 3.240

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