Literature DB >> 15212793

The 3' termini of small RNAs in Trypanosoma brucei.

Robert A Hitchcock1, Gusti M Zeiner, Nancy R Sturm, David A Campbell.   

Abstract

Post-transcriptional 3' end formation is an essential step in the maturation of most small RNAs. Knowledge of the precise 3' ends of mature RNAs is essential for defining 3'-processing activities. We have mapped the mature 3' ends of Spliced Leader RNA, the U1, U2, U4, U5, and U6 small nuclear RNAs, the U3 small nucleolar RNA, and the 5S and 5.8S ribosomal RNAs by ligation-mediated PCR in Trypanosoma brucei. With the exception of U5, two classes of 3' ends were observed: flush with the base of a stem-loop structure, and 1-2 nt extended from a stem-loop. Multiple mechanisms and structural features are likely to influence 3' end maturation of RNAs.

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Year:  2004        PMID: 15212793     DOI: 10.1016/j.femsle.2004.05.020

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN: 0378-1097            Impact factor:   2.742


  6 in total

1.  3'-End polishing of the kinetoplastid spliced leader RNA is performed by SNIP, a 3'-->5' exonuclease with a Motley assortment of small RNA substrates.

Authors:  Gusti M Zeiner; Robert A Hitchcock; Nancy R Sturm; David A Campbell
Journal:  Mol Cell Biol       Date:  2004-12       Impact factor: 4.272

2.  The 2'-O-ribose methyltransferase for cap 1 of spliced leader RNA and U1 small nuclear RNA in Trypanosoma brucei.

Authors:  Jesse R Zamudio; Bidyottam Mittra; Silvie Foldynová-Trantírková; Gusti M Zeiner; Julius Lukes; Janusz M Bujnicki; Nancy R Sturm; David A Campbell
Journal:  Mol Cell Biol       Date:  2007-07-02       Impact factor: 4.272

3.  A novel class of developmentally regulated noncoding RNAs in Leishmania.

Authors:  Carole Dumas; Conan Chow; Michaela Müller; Barbara Papadopoulou
Journal:  Eukaryot Cell       Date:  2006-10-27

4.  Hypermethylated cap 4 maximizes Trypanosoma brucei translation.

Authors:  Jesse R Zamudio; Bidyottam Mittra; David A Campbell; Nancy R Sturm
Journal:  Mol Microbiol       Date:  2009-06       Impact factor: 3.501

5.  Transcription of Leishmania major U2 small nuclear RNA gene is directed by extragenic sequences located within a tRNA-like and a tRNA-Ala gene.

Authors:  Saúl Rojas-Sánchez; Elisa Figueroa-Angulo; Rodrigo Moreno-Campos; Luis E Florencio-Martínez; Rebeca G Manning-Cela; Santiago Martínez-Calvillo
Journal:  Parasit Vectors       Date:  2016-07-19       Impact factor: 3.876

6.  Fail-safe transcriptional termination for protein-coding genes in S. cerevisiae.

Authors:  Ana G Rondón; Hannah E Mischo; Junya Kawauchi; Nick J Proudfoot
Journal:  Mol Cell       Date:  2009-10-09       Impact factor: 19.328

  6 in total

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