Literature DB >> 15211032

Hydrogen and hydration in proteins.

Nobuo Niimura1, Toshiyuki Chatake, Kazuo Kurihara, Mitsuru Maeda.   

Abstract

Neutron diffraction provides an experimental method of directly locating hydrogen atoms in proteins. High-resolution neutron diffractometers dedicated to biological macromolecules (BIX-type diffractometer) have been constructed at the Japan Atomic Energy Research Institute and they have been used in the 1.5A-resolution crystal structure analyses of several proteins. Interesting topics relevant to hydrogen and hydration in proteins, such as (1) the detailed geometry of hydrogen bonds; (2) information regarding hydrogen/deuterium exchange behavior; (3) the acidities of certain H atoms; (4) the role of hydrogen atoms in enzyme mechanisms and thermostability; (5) the location methyl hydrogen atoms; and (6) dynamical behavior of hydration structures that include H positions have been extracted from these structural results. In addition, a method for the systematic growth of large single crystals based on phase diagrams has been introduced and will be briefly described in this article.

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Year:  2004        PMID: 15211032     DOI: 10.1385/CBB:40:3:351

Source DB:  PubMed          Journal:  Cell Biochem Biophys        ISSN: 1085-9195            Impact factor:   2.194


  6 in total

1.  Joint X-ray and neutron refinement with phenix.refine.

Authors:  Pavel V Afonine; Marat Mustyakimov; Ralf W Grosse-Kunstleve; Nigel W Moriarty; Paul Langan; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

2.  Quantum model of catalysis based on a mobile proton revealed by subatomic x-ray and neutron diffraction studies of h-aldose reductase.

Authors:  Matthew P Blakeley; Federico Ruiz; Raul Cachau; Isabelle Hazemann; Flora Meilleur; Andre Mitschler; Stephan Ginell; Pavel Afonine; Oscar N Ventura; Alexandra Cousido-Siah; Michael Haertlein; Andrzej Joachimiak; Dean Myles; Alberto Podjarny
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-04       Impact factor: 11.205

3.  Crystal structural analysis of protein-protein interactions drastically destabilized by a single mutation.

Authors:  Yoshiaki Urakubo; Teikichi Ikura; Nobutoshi Ito
Journal:  Protein Sci       Date:  2008-04-25       Impact factor: 6.725

4.  Histidine hydrogen-deuterium exchange mass spectrometry for probing the microenvironment of histidine residues in dihydrofolate reductase.

Authors:  Masaru Miyagi; Qun Wan; Md Faiz Ahmad; Giridharan Gokulrangan; Sara E Tomechko; Brad Bennett; Chris Dealwis
Journal:  PLoS One       Date:  2011-02-16       Impact factor: 3.240

5.  Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements.

Authors:  Shigeki Arai; Toshiyuki Chatake; Takashi Ohhara; Kazuo Kurihara; Ichiro Tanaka; Nobuhiro Suzuki; Zui Fujimoto; Hiroshi Mizuno; Nobuo Niimura
Journal:  Nucleic Acids Res       Date:  2005-05-24       Impact factor: 16.971

6.  On the complementarity of X-ray and NMR data.

Authors:  Antonio Schirò; Azzurra Carlon; Giacomo Parigi; Garib Murshudov; Vito Calderone; Enrico Ravera; Claudio Luchinat
Journal:  J Struct Biol X       Date:  2020-01-07
  6 in total

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