Literature DB >> 15208409

Beyond Arabidopsis. Translational biology meets evolutionary developmental biology.

Vivian F Irish1, Philip N Benfey.   

Abstract

Developmental processes shape plant morphologies, which constitute important adaptive traits selected for during evolution. Identifying the genes that act in developmental pathways and determining how they are modified during evolution is the focus of the field of evolutionary developmental biology, or evo-devo. Knowledge of genetic pathways in the plant model Arabidopsis serves as the starting point for investigating how the toolkit of developmental pathways has been used and reused to form different plant body plans. One productive approach is to identify genes in other species that are orthologous to genes known to control developmental pathways in Arabidopsis and then determine what changes have occurred in the protein coding sequence or in the gene's expression to produce an altered morphology. A second approach relies on natural variation among wild populations or crop plants. Natural variation can be exploited to identify quantitative trait loci that underlie important developmental traits and, thus, define those genes that are responsible for adaptive changes. The possibility of applying comparative genomics approaches to Arabidopsis and related species promises profound new insights into the interplay of evolution and development.

Entities:  

Mesh:

Year:  2004        PMID: 15208409      PMCID: PMC514096          DOI: 10.1104/pp.104.041632

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  23 in total

1.  Distinct roles of CONSTANS target genes in reproductive development of Arabidopsis.

Authors:  A Samach; H Onouchi; S E Gold; G S Ditta; Z Schwarz-Sommer; M F Yanofsky; G Coupland
Journal:  Science       Date:  2000-06-02       Impact factor: 47.728

2.  Homologies in leaf form inferred from KNOXI gene expression during development.

Authors:  Geeta Bharathan; Thomas E Goliber; Christopher Moore; Sharon Kessler; Thinh Pham; Neelima R Sinha
Journal:  Science       Date:  2002-06-07       Impact factor: 47.728

3.  Evolution of gene expression in the Drosophila melanogaster subgroup.

Authors:  Scott A Rifkin; Junhyong Kim; Kevin P White
Journal:  Nat Genet       Date:  2003-01-27       Impact factor: 38.330

4.  A QTL for flowering time in Arabidopsis reveals a novel allele of CRY2.

Authors:  S El-Din El-Assal; C Alonso-Blanco; A J Peeters; V Raz; M Koornneef
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

5.  Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.

Authors: 
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

6.  Evolution of genetic mechanisms controlling petal development.

Authors:  E M Kramer; V F Irish
Journal:  Nature       Date:  1999-05-13       Impact factor: 49.962

7.  Adaptation of photoperiodic control pathways produces short-day flowering in rice.

Authors:  Ryosuke Hayama; Shuji Yokoi; Shojiro Tamaki; Masahiro Yano; Ko Shimamoto
Journal:  Nature       Date:  2003-04-17       Impact factor: 49.962

8.  Functional divergence within the APETALA3/PISTILLATA floral homeotic gene lineages.

Authors:  Rebecca S Lamb; Vivian F Irish
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-13       Impact factor: 11.205

9.  ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis.

Authors:  Mary E Byrne; Joseph Simorowski; Robert A Martienssen
Journal:  Development       Date:  2002-04       Impact factor: 6.868

10.  Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.

Authors:  Lucie Parenicová; Stefan de Folter; Martin Kieffer; David S Horner; Cristina Favalli; Jacqueline Busscher; Holly E Cook; Richard M Ingram; Martin M Kater; Brendan Davies; Gerco C Angenent; Lucia Colombo
Journal:  Plant Cell       Date:  2003-07       Impact factor: 11.277

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  8 in total

Review 1.  Evolutionary and developmental studies of unifacial leaves in monocots: Juncus as a model system.

Authors:  Takahiro Yamaguchi; Hirokazu Tsukaya
Journal:  J Plant Res       Date:  2009-08-20       Impact factor: 2.629

2.  Genetic transformation of Arabidopsis lyrata: specific expression of the green fluorescent protein (GFP) in pistil tissues.

Authors:  Isabelle Fobis-Loisy; Pierre Chambrier; Thierry Gaude
Journal:  Plant Cell Rep       Date:  2007-01-05       Impact factor: 4.964

3.  Comparative genomic analysis of 1047 completely sequenced cDNAs from an Arabidopsis-related model halophyte, Thellungiella halophila.

Authors:  Teruaki Taji; Kenji Komatsu; Taku Katori; Yoshikazu Kawasaki; Yoichi Sakata; Shigeo Tanaka; Masatomo Kobayashi; Atsushi Toyoda; Motoaki Seki; Kazuo Shinozaki
Journal:  BMC Plant Biol       Date:  2010-11-24       Impact factor: 4.215

4.  Plant reproductive genomics at the Plant and Animal Genome Conference.

Authors:  Jim Leebens-Mack; Douglas E Soltis; Pamela S Soltis
Journal:  Comp Funct Genomics       Date:  2005

5.  Regulation of gametogenesis and zoosporogenesis in Ulva linza (Chlorophyta): comparison with Ulva mutabilis and potential for laboratory culture.

Authors:  Eleanor F Vesty; Ralf W Kessler; Thomas Wichard; Juliet C Coates
Journal:  Front Plant Sci       Date:  2015-01-26       Impact factor: 5.753

6.  Reconsideration of Plant Morphological Traits: From a Structure-Based Perspective to a Function-Based Evolutionary Perspective.

Authors:  Shu-Nong Bai
Journal:  Front Plant Sci       Date:  2017-03-15       Impact factor: 5.753

7.  Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants.

Authors:  Matthieu G Conte; Sylvain Gaillard; Gaetan Droc; Christophe Perin
Journal:  BMC Genomics       Date:  2008-04-21       Impact factor: 3.969

8.  GreenPhylDB: a database for plant comparative genomics.

Authors:  M G Conte; S Gaillard; N Lanau; M Rouard; C Périn
Journal:  Nucleic Acids Res       Date:  2007-11-05       Impact factor: 16.971

  8 in total

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