Literature DB >> 15201184

TMRPres2D: high quality visual representation of transmembrane protein models.

Ioannis C Spyropoulos1, Theodore D Liakopoulos, Pantelis G Bagos, Stavros J Hamodrakas.   

Abstract

The 'TransMembrane protein Re-Presentation in 2-Dimensions' (TMRPres2D) tool, automates the creation of uniform, two-dimensional, high analysis graphical images/models of alpha-helical or beta-barrel transmembrane proteins. Protein sequence data and structural information may be acquired from public protein knowledge bases, emanate from prediction algorithms, or even be defined by the user. Several important biological and physical sequence attributes can be embedded in the graphical representation.

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Year:  2004        PMID： 15201184     DOI： 10.1093/bioinformatics/bth358

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  64 in total

1.  Improving the resistance of a eukaryotic β-barrel protein to thermal and chemical perturbations.

Authors:  Dennis Gessmann; Frauke Mager; Hammad Naveed; Thomas Arnold; Sara Weirich; Dirk Linke; Jie Liang; Stephan Nussberger
Journal:  J Mol Biol       Date:  2011-07-29       Impact factor: 5.469

2.  Protein kinase A stimulates Kv7.1 surface expression by regulating Nedd4-2-dependent endocytic trafficking.

Authors:  Martin N Andersen; Louise L Hefting; Annette B Steffensen; Nicole Schmitt; Søren-Peter Olesen; Jesper V Olsen; Alicia Lundby; Hanne B Rasmussen
Journal:  Am J Physiol Cell Physiol       Date:  2015-09-24       Impact factor: 4.249

3.  Mutations of the membrane-bound disulfide reductase DsbD that block electron transfer steps from cytoplasm to periplasm in Escherichia coli.

Authors:  Seung-Hyun Cho; Jon Beckwith
Journal:  J Bacteriol       Date:  2006-07       Impact factor: 3.490

4.  Elastase digests: new ammunition for shotgun membrane proteomics.

Authors:  Benjamin Rietschel; Tabiwang N Arrey; Bjoern Meyer; Sandra Bornemann; Malte Schuerken; Michael Karas; Ansgar Poetsch
Journal:  Mol Cell Proteomics       Date:  2008-12-30       Impact factor: 5.911

5.  CRISPR/Cas9‒Mediated Tspo Gene Mutations Lead to Reduced Mitochondrial Membrane Potential and Steroid Formation in MA-10 Mouse Tumor Leydig Cells.

Authors:  Jinjiang Fan; Kevin Wang; Barry Zirkin; Vassilios Papadopoulos
Journal:  Endocrinology       Date:  2018-02-01       Impact factor: 4.736

6.  Modification of Pseudomonas aeruginosa Pa5196 type IV Pilins at multiple sites with D-Araf by a novel GT-C family Arabinosyltransferase, TfpW.

Authors:  Julianne V Kus; John Kelly; Luc Tessier; Hanjeong Harvey; Dennis G Cvitkovitch; Lori L Burrows
Journal:  J Bacteriol       Date:  2008-09-19       Impact factor: 3.490

7.  Francisella tularensis Schu S4 lipopolysaccharide core sugar and O-antigen mutants are attenuated in a mouse model of tularemia.

Authors:  Jed A Rasmussen; Deborah M B Post; Bradford W Gibson; Stephen R Lindemann; Michael A Apicella; David K Meyerholz; Bradley D Jones
Journal:  Infect Immun       Date:  2014-01-22       Impact factor: 3.441

8.  Functional specialization in nucleotide sugar transporters occurred through differentiation of the gene cluster EamA (DUF6) before the radiation of Viridiplantae.

Authors:  Åke Västermark; Markus Sällman Almén; Martin W Simmen; Robert Fredriksson; Helgi B Schiöth
Journal:  BMC Evol Biol       Date:  2011-05-12       Impact factor: 3.260

9.  Isolation and functional characterization of a delta 6-desaturase gene from the pike eel (Muraenesox cinereus).

Authors:  Sun Hee Kim; Kyung Hee Roh; Jung-Bong Kim; Kwang-Soo Kim; Nam Shin Kim; Hyun Uk Kim; Kyeong-Ryeol Lee; Jong-Sug Park; Jong-Bum Kim
Journal:  J Microbiol       Date:  2013-10-05       Impact factor: 3.422

10.  NHA-oc/NHA2: a mitochondrial cation-proton antiporter selectively expressed in osteoclasts.

Authors:  R A Battaglino; L Pham; L R Morse; M Vokes; A Sharma; P R Odgren; M Yang; H Sasaki; P Stashenko
Journal:  Bone       Date:  2007-09-26       Impact factor: 4.398
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