Literature DB >> 15201180

GOLDsurfer: three dimensional display of linkage disequilibrium.

Fredrik Pettersson1, Oskar Jonsson, Lon R Cardon.   

Abstract

GOLDsurfer is a java-based analysis and graphics program for three-dimensional plotting of linkage disequilibrium (LD). Simultaneous presentation of LD measures, including recombination rate estimates and disease association statistics, helps to clarify LD patterns and facilitates interpretations based on multiple indices of local genetic data.

Mesh：

Year:  2004        PMID： 15201180     DOI： 10.1093/bioinformatics/bth341

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  10 in total

1.  A high-resolution linkage-disequilibrium map of the human major histocompatibility complex and first generation of tag single-nucleotide polymorphisms.

Authors:  Marcos M Miretti; Emily C Walsh; Xiayi Ke; Marcos Delgado; Mark Griffiths; Sarah Hunt; Jonathan Morrison; Pamela Whittaker; Eric S Lander; Lon R Cardon; David R Bentley; John D Rioux; Stephan Beck; Panos Deloukas
Journal:  Am J Hum Genet       Date:  2005-03-01       Impact factor: 11.025

2.  Basic statistical analysis in genetic case-control studies.

Authors:  Geraldine M Clarke; Carl A Anderson; Fredrik H Pettersson; Lon R Cardon; Andrew P Morris; Krina T Zondervan
Journal:  Nat Protoc       Date:  2011-02-03       Impact factor: 13.491

3.  Data quality control in genetic case-control association studies.

Authors:  Carl A Anderson; Fredrik H Pettersson; Geraldine M Clarke; Lon R Cardon; Andrew P Morris; Krina T Zondervan
Journal:  Nat Protoc       Date:  2010-08-26       Impact factor: 13.491

4.  A 77-kilobase region of chromosome 6p22.2 is associated with dyslexia in families from the United Kingdom and from the United States.

Authors:  Clyde Francks; Silvia Paracchini; Shelley D Smith; Alex J Richardson; Tom S Scerri; Lon R Cardon; Angela J Marlow; I Laurence MacPhie; Janet Walter; Bruce F Pennington; Simon E Fisher; Richard K Olson; John C DeFries; John F Stein; Anthony P Monaco
Journal:  Am J Hum Genet       Date:  2004-10-22       Impact factor: 11.025

5.  Modeling associations between genetic markers using Bayesian networks.

Authors:  Edwin Villanueva; Carlos Dias Maciel
Journal:  Bioinformatics       Date:  2010-09-15       Impact factor: 6.937

6.  Genetic analysis of completely sequenced disease-associated MHC haplotypes identifies shuffling of segments in recent human history.

Authors:  James A Traherne; Roger Horton; Anne N Roberts; Marcos M Miretti; Matthew E Hurles; C Andrew Stewart; Jennifer L Ashurst; Alexey M Atrazhev; Penny Coggill; Sophie Palmer; Jeff Almeida; Sarah Sims; Laurens G Wilming; Jane Rogers; Pieter J de Jong; Mary Carrington; John F Elliott; Stephen Sawcer; John A Todd; John Trowsdale; Stephan Beck
Journal:  PLoS Genet       Date:  2006-01-27       Impact factor: 5.917

7.  MIDAS: software for analysis and visualisation of interallelic disequilibrium between multiallelic markers.

Authors:  Tom R Gaunt; Santiago Rodriguez; Carlos Zapata; Ian N M Day
Journal:  BMC Bioinformatics       Date:  2006-04-27       Impact factor: 3.169

8.  Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool 'CubeX'.

Authors:  Tom R Gaunt; Santiago Rodríguez; Ian Nm Day
Journal:  BMC Bioinformatics       Date:  2007-11-02       Impact factor: 3.169

9.  Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes.

Authors:  Eleftheria Zeggini; Michael N Weedon; Cecilia M Lindgren; Timothy M Frayling; Katherine S Elliott; Hana Lango; Nicholas J Timpson; John R B Perry; Nigel W Rayner; Rachel M Freathy; Jeffrey C Barrett; Beverley Shields; Andrew P Morris; Sian Ellard; Christopher J Groves; Lorna W Harries; Jonathan L Marchini; Katharine R Owen; Beatrice Knight; Lon R Cardon; Mark Walker; Graham A Hitman; Andrew D Morris; Alex S F Doney; Mark I McCarthy; Andrew T Hattersley
Journal:  Science       Date:  2007-04-26       Impact factor: 47.728

10.  Goldsurfer2 (Gs2): a comprehensive tool for the analysis and visualization of genome wide association studies.

Authors:  Fredrik Pettersson; Andrew P Morris; Michael R Barnes; Lon R Cardon
Journal:  BMC Bioinformatics       Date:  2008-03-04       Impact factor: 3.169
  10 in total

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