Literature DB >> 15193320

Atomic force microscopy imaging and pulling of nucleic acids.

Helen G Hansma1, Kenichi Kasuya, Emin Oroudjev.   

Abstract

Recent advances in atomic force microscopy (AFM) imaging of nucleic acids include the visualization of DNA and RNA incorporated into devices and patterns, and into structures based on their sequences or sequence recognition. AFM imaging of nuclear structures has contributed to advances in telomere research and to our understanding of nucleosome formation. Highlights of force spectroscopy or pulling of nucleic acids include the use of DNA as a programmable force sensor, and the analysis of RNA flexibility and drug binding to DNA.

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Year:  2004        PMID: 15193320     DOI: 10.1016/j.sbi.2004.05.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  20 in total

1.  Long-range RNA-RNA interactions circularize the dengue virus genome.

Authors:  Diego E Alvarez; María F Lodeiro; Silvio J Ludueña; Lía I Pietrasanta; Andrea V Gamarnik
Journal:  J Virol       Date:  2005-06       Impact factor: 5.103

2.  Localization of linker histone in chromatosomes by cryo-atomic force microscopy.

Authors:  Sitong Sheng; Daniel M Czajkowsky; Zhifeng Shao
Journal:  Biophys J       Date:  2006-06-16       Impact factor: 4.033

3.  Using atomic force microscopy to study chromatin structure and nucleosome remodeling.

Authors:  D Lohr; R Bash; H Wang; J Yodh; S Lindsay
Journal:  Methods       Date:  2007-03       Impact factor: 3.608

4.  Force unfolding kinetics of RNA using optical tweezers. II. Modeling experiments.

Authors:  M Manosas; J-D Wen; P T X Li; S B Smith; C Bustamante; I Tinoco; F Ritort
Journal:  Biophys J       Date:  2007-02-09       Impact factor: 4.033

5.  Detecting ultraviolet damage in single DNA molecules by atomic force microscopy.

Authors:  Yong Jiang; Changhong Ke; Piotr A Mieczkowski; Piotr E Marszalek
Journal:  Biophys J       Date:  2007-05-04       Impact factor: 4.033

6.  Elasticity of short DNA molecules: theory and experiment for contour lengths of 0.6-7 microm.

Authors:  Yeonee Seol; Jinyu Li; Philip C Nelson; Thomas T Perkins; M D Betterton
Journal:  Biophys J       Date:  2007-08-31       Impact factor: 4.033

7.  Microscopic mechanism for experimentally observed anomalous elasticity of DNA in two dimensions.

Authors:  Nicolas Destainville; Manoel Manghi; John Palmeri
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

8.  Atomic force microscopy captures MutS tetramers initiating DNA mismatch repair.

Authors:  Yong Jiang; Piotr E Marszalek
Journal:  EMBO J       Date:  2011-06-10       Impact factor: 11.598

9.  Two-component atomic force microscopy recognition imaging of complex samples.

Authors:  H Wang; R Bash; D Lohr
Journal:  Anal Biochem       Date:  2006-12-20       Impact factor: 3.365

Review 10.  Genome cyclization as strategy for flavivirus RNA replication.

Authors:  Sergio M Villordo; Andrea V Gamarnik
Journal:  Virus Res       Date:  2008-09-09       Impact factor: 3.303

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