Literature DB >> 15193319

RNA folding and unfolding.

Bibiana Onoa1, Ignacio Tinoco.   

Abstract

Single-molecule studies of RNA folding and unfolding are providing impressive details of the intermediates that occur and their rates of interconversion. The folding and unfolding of RNA are controlled by varying the concentration of magnesium ions and measuring fluorescence energy transfer, or by applying force to the RNA and measuring the end-to-end distance. The hierarchical nature of RNA folding - first secondary structure, then tertiary structure - makes the process susceptible to analysis and prediction.

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Year:  2004        PMID: 15193319     DOI: 10.1016/j.sbi.2004.04.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  40 in total

1.  Induced fit or conformational selection for RNA/U1A folding.

Authors:  Fang Qin; Yue Chen; Maoying Wu; Yixue Li; Jian Zhang; Hai-Feng Chen
Journal:  RNA       Date:  2010-03-30       Impact factor: 4.942

2.  Developing three-dimensional models of putative-folding intermediates of the HDV ribozyme.

Authors:  Cédric Reymond; Dominique Lévesque; Martin Bisaillon; Jean-Pierre Perreault
Journal:  Structure       Date:  2010-12-08       Impact factor: 5.006

3.  Mechanical unfolding of RNA hairpins.

Authors:  Changbong Hyeon; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-04       Impact factor: 11.205

4.  A counterintuitive Mg2+-dependent and modification-assisted functional folding of mitochondrial tRNAs.

Authors:  Christopher I Jones; Angela C Spencer; Jennifer L Hsu; Linda L Spremulli; Susan A Martinis; Michele DeRider; Paul F Agris
Journal:  J Mol Biol       Date:  2006-07-27       Impact factor: 5.469

5.  Correlation between mechanical strength of messenger RNA pseudoknots and ribosomal frameshifting.

Authors:  Thomas M Hansen; S Nader S Reihani; Lene B Oddershede; Michael A Sørensen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-27       Impact factor: 11.205

6.  Force unfolding kinetics of RNA using optical tweezers. I. Effects of experimental variables on measured results.

Authors:  Jin-Der Wen; Maria Manosas; Pan T X Li; Steven B Smith; Carlos Bustamante; Felix Ritort; Ignacio Tinoco
Journal:  Biophys J       Date:  2007-02-09       Impact factor: 4.033

7.  Forced-unfolding and force-quench refolding of RNA hairpins.

Authors:  Changbong Hyeon; D Thirumalai
Journal:  Biophys J       Date:  2006-02-10       Impact factor: 4.033

8.  Role of Mg2+ in hammerhead ribozyme catalysis from molecular simulation.

Authors:  Tai-Sung Lee; Carlos Silva López; George M Giambasu; Monika Martick; William G Scott; Darrin M York
Journal:  J Am Chem Soc       Date:  2008-02-14       Impact factor: 15.419

Review 9.  Metal ions: supporting actors in the playbook of small ribozymes.

Authors:  Alexander E Johnson-Buck; Sarah E McDowell; Nils G Walter
Journal:  Met Ions Life Sci       Date:  2011

Review 10.  Modulating RNA structure and catalysis: lessons from small cleaving ribozymes.

Authors:  Cedric Reymond; Jean-Denis Beaudoin; Jean-Pierre Perreault
Journal:  Cell Mol Life Sci       Date:  2009-08-30       Impact factor: 9.261

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