Literature DB >> 15190373

DNA-Feulgen cytophotometric determination of genome size for the freshwater-invading copepod Eurytemora affinis.

Ellen M Rasch1, Carol Eunmi Lee, Grace A Wyngaard.   

Abstract

Variation in nuclear DNA content within some eukaryotic species is well documented, but causes and consequences of such variation remain unclear. Here we report genome size of an estuarine and salt-marsh calanoid copepod, Eurytemora affinis, which has recently invaded inland freshwater habitats independently and repeatedly in North America, Europe, and Asia. Adults and embryos of E. affinis from the St. Lawrence River drainage were examined for somatic cell DNA content and the presence or absence of embryonic chromatin diminution, using Feulgen-DNA cytophotometry to determine a diploid or 2C genome size of 0.6-0.7 pg DNA/cell. The majority of somatic cell nuclei, however, have twice this DNA content (1.3 pg/nucleus) in all of the adults examined and possibly represent a population of cells arrested at the G2 stage of the cell cycle or associated with some degree of endopolyploidy. Both suggestions contradict assumptions that DNA replication does not occur in adult tissues during the determinate growth characteristic of copepods. Absence of germ cell nuclei with markedly elevated DNA values, commonly found for species of cyclopoid copepods that show chromatin diminution, indicates that E. affinis lacks this trait. The small genome size and presumed absence of chromatin diminution increase the potential utility of E. affinis as a model for genomic studies on mechanisms of adaptation during freshwater invasions.

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Year:  2004        PMID: 15190373     DOI: 10.1139/g04-014

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  6 in total

1.  Genome-wide comparative analysis of four Indian Drosophila species.

Authors:  Sujata Mohanty; Radhika Khanna
Journal:  Mol Genet Genomics       Date:  2017-06-28       Impact factor: 3.291

Review 2.  Evolutionary mechanisms of habitat invasions, using the copepod Eurytemora affinis as a model system.

Authors:  Carol Eunmi Lee
Journal:  Evol Appl       Date:  2015-11-30       Impact factor: 5.183

3.  Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda.

Authors:  Seong-Il Eyun; Ho Young Soh; Marijan Posavi; James B Munro; Daniel S T Hughes; Shwetha C Murali; Jiaxin Qu; Shannon Dugan; Sandra L Lee; Hsu Chao; Huyen Dinh; Yi Han; HarshaVardhan Doddapaneni; Kim C Worley; Donna M Muzny; Eun-Ok Park; Joana C Silva; Richard A Gibbs; Stephen Richards; Carol Eunmi Lee
Journal:  Mol Biol Evol       Date:  2017-08-01       Impact factor: 16.240

4.  The Genome and mRNA Transcriptome of the Cosmopolitan Calanoid Copepod Acartia tonsa Dana Improve the Understanding of Copepod Genome Size Evolution.

Authors:  Tue Sparholt Jørgensen; Bent Petersen; H Cecilie B Petersen; Patrick Denis Browne; Stefan Prost; Jonathon H Stillman; Lars Hestbjerg Hansen; Benni Winding Hansen
Journal:  Genome Biol Evol       Date:  2019-05-01       Impact factor: 3.416

5.  The salmon louse genome may be much larger than sequencing suggests.

Authors:  Grace A Wyngaard; Rasmus Skern-Mauritzen; Ketil Malde; Rachel Prendergast; Stefano Peruzzi
Journal:  Sci Rep       Date:  2022-04-22       Impact factor: 4.996

6.  Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research.

Authors:  Vladimir Mashanov; Denis Jacob Machado; Robert Reid; Cory Brouwer; Janice Kofsky; Daniel A Janies
Journal:  BMC Genomics       Date:  2022-08-11       Impact factor: 4.547

  6 in total

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