Literature DB >> 15189056

Dynamics and bistability in a reduced model of the lac operon.

Necmettin Yildirim1, Moises Santillan, Daisuke Horike, Michael C Mackey.   

Abstract

It is known that the lac operon regulatory pathway is capable of showing bistable behavior. This is an important complex feature, arising from the nonlinearity of the involved mechanisms, which is essential to understand the dynamic behavior of this molecular regulatory system. To find which of the mechanisms involved in the regulation of the lac operon is the origin of bistability, we take a previously published model which accounts for the dynamics of mRNA, lactose, allolactose, permease and beta-galactosidase involvement and simplify it by ignoring permease dynamics (assuming a constant permease concentration). To test the behavior of the reduced model, three existing sets of data on beta-galactosidase levels as a function of time are simulated and we obtain a reasonable agreement between the data and the model predictions. The steady states of the reduced model were numerically and analytically analyzed and it was shown that it may indeed display bistability, depending on the extracellular lactose concentration and growth rate. (c) 2004 American Institute of Physics

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15189056     DOI: 10.1063/1.1689451

Source DB:  PubMed          Journal:  Chaos        ISSN: 1054-1500            Impact factor:   3.642


  11 in total

Review 1.  How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria.

Authors:  Josef Deutscher; Christof Francke; Pieter W Postma
Journal:  Microbiol Mol Biol Rev       Date:  2006-12       Impact factor: 11.056

2.  Control of Streptococcus pyogenes virulence: modeling of the CovR/S signal transduction system.

Authors:  Alexander Y Mitrophanov; Gordon Churchward; Mark Borodovsky
Journal:  J Theor Biol       Date:  2006-11-21       Impact factor: 2.691

Review 3.  Quantitative approaches to the study of bistability in the lac operon of Escherichia coli.

Authors:  Moisés Santillán; Michael C Mackey
Journal:  J R Soc Interface       Date:  2008-08-06       Impact factor: 4.118

Review 4.  Mitogen-activated protein kinase signalling and ERK1/2 bistability in asthma.

Authors:  R Alam; M M Gorska
Journal:  Clin Exp Allergy       Date:  2010-12-01       Impact factor: 5.018

5.  Origin of bistability in the lac Operon.

Authors:  M Santillán; M C Mackey; E S Zeron
Journal:  Biophys J       Date:  2007-03-09       Impact factor: 4.033

6.  Establishment of extracellular signal-regulated kinase 1/2 bistability and sustained activation through Sprouty 2 and its relevance for epithelial function.

Authors:  Weimin Liu; Kavita Tundwal; Qiaoling Liang; Nicholas Goplen; Sadee Rozario; Nayeem Quayum; Magdalena Gorska; Sally Wenzel; Silvana Balzar; Rafeul Alam
Journal:  Mol Cell Biol       Date:  2010-02-01       Impact factor: 4.272

7.  Interlinked dual-time feedback loops can enhance robustness to stochasticity and persistence of memory.

Authors:  Paul Smolen; Douglas A Baxter; John H Byrne
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-03-04

8.  Structurally robust biological networks.

Authors:  Franco Blanchini; Elisa Franco
Journal:  BMC Syst Biol       Date:  2011-05-17

9.  Stochasticity, bistability and the wisdom of crowds: a model for associative learning in genetic regulatory networks.

Authors:  Matan Sorek; Nathalie Q Balaban; Yonatan Loewenstein
Journal:  PLoS Comput Biol       Date:  2013-08-22       Impact factor: 4.475

Review 10.  The utility of simple mathematical models in understanding gene regulatory dynamics.

Authors:  Michael C Mackey; Moisés Santillán; Marta Tyran-Kamińska; Eduardo S Zeron
Journal:  In Silico Biol       Date:  2015
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.