Literature DB >> 15186766

Evolutionary genomics: yeasts accelerate beyond BLAST.

Ken Wolfe1.   

Abstract

Two new genome sequences confirm that a whole genome duplication occurred in an ancestor of Saccharomyces cerevisiae. This left a legacy of about 500 pairs of duplicated genes, many of which contribute to this yeast's ability to ferment glucose anaerobically; a few have been evolving so quickly they retain almost no sequence similarity to each other.

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Year:  2004        PMID: 15186766     DOI: 10.1016/j.cub.2004.05.015

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  39 in total

1.  Conserved functions of yeast genes support the duplication, degeneration and complementation model for gene duplication.

Authors:  Ambro van Hoof
Journal:  Genetics       Date:  2005-06-18       Impact factor: 4.562

2.  Specificity in protein interactions and its relationship with sequence diversity and coevolution.

Authors:  Luke Hakes; Simon C Lovell; Stephen G Oliver; David L Robertson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-27       Impact factor: 11.205

3.  The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication.

Authors:  Aviva Presser; Michael B Elowitz; Manolis Kellis; Roy Kishony
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-16       Impact factor: 11.205

4.  Relaxation of yeast mitochondrial functions after whole-genome duplication.

Authors:  Huifeng Jiang; Wenjun Guan; David Pinney; Wen Wang; Zhenglong Gu
Journal:  Genome Res       Date:  2008-07-30       Impact factor: 9.043

5.  Use of non-conventional yeast improves the wine aroma profile of Ribolla Gialla.

Authors:  Sofia Dashko; Nerve Zhou; Tinkara Tinta; Paolo Sivilotti; Melita Sternad Lemut; Kajetan Trost; Amparo Gamero; Teun Boekhout; Lorena Butinar; Urska Vrhovsek; Jure Piskur
Journal:  J Ind Microbiol Biotechnol       Date:  2015-04-23       Impact factor: 3.346

6.  Use of game-theoretical methods in biochemistry and biophysics.

Authors:  Stefan Schuster; Jan-Ulrich Kreft; Anja Schroeter; Thomas Pfeiffer
Journal:  J Biol Phys       Date:  2008-08-06       Impact factor: 1.365

7.  Metabolic functions of duplicate genes in Saccharomyces cerevisiae.

Authors:  Lars Kuepfer; Uwe Sauer; Lars M Blank
Journal:  Genome Res       Date:  2005-10       Impact factor: 9.043

8.  Phylostratigraphic bias creates spurious patterns of genome evolution.

Authors:  Bryan A Moyers; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2014-10-13       Impact factor: 16.240

9.  A model system for mitochondrial biogenesis reveals evolutionary rewiring of protein import and membrane assembly pathways.

Authors:  Victoria L Hewitt; Eva Heinz; Miguel Shingu-Vazquez; Yue Qu; Branka Jelicic; Tricia L Lo; Traude H Beilharz; Geoff Dumsday; Kipros Gabriel; Ana Traven; Trevor Lithgow
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-14       Impact factor: 11.205

10.  In silico evidence for functional specialization after genome duplication in yeast.

Authors:  Ossi Turunen; Ralph Seelke; Jed Macosko
Journal:  FEMS Yeast Res       Date:  2009-02       Impact factor: 2.796

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