| Literature DB >> 15185673 |
Yuto Komeiji1, Yuichi Inadomi, Tatsuya Nakano.
Abstract
A program package for molecular simulations of biological molecules was developed. The package, "PEACH version 4 with ABINIT-MP version 20021029," was constructed by incorporating ABINIT-MP, a program for the fragment molecular orbital (FMO) method [Chem.Phys. Lett. 313 (1999) 701], into PEACH, a program package for classical molecular dynamics simulations (MD). A few capabilities of the package were demonstrated. First, high parallel efficiency of FMO was demonstrated in a single point calculation of a protein. Second,FMO-MD simulations [Chem. Phys. Lett. 372 (2003) 342] of a peptide were performed with and without explicit solvent, and the simulations showed the influence of the solvent on the electronic state of the peptide.Entities:
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Year: 2004 PMID： 15185673 DOI： 10.1016/j.compbiolchem.2004.01.003
Source DB: PubMed Journal: Comput Biol Chem ISSN： 1476-9271 Impact factor: 2.877