Literature DB >> 15185330

New 2D graphical representation of DNA sequences.

Bo Liao1, Tian-Ming Wang.   

Abstract

We consider a 2D graphical representations of DNA sequences, which avoids loss of information associated with crossing and overlapping of the corresponding curve. We outline an approach, which is based on the construction of a three-component vector whose components are the normalized leading eigenvalues of the L/L matrices associated with DNA. The examination of similarities/dissimilarities among the coding sequences of the first exon of beta-globin gene of different species illustrates the utility of the approach. Copyright 2004 Wiley Periodicals, Inc.

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Year:  2004        PMID: 15185330     DOI: 10.1002/jcc.20060

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  12 in total

1.  Study of peptide fingerprints of parasite proteins and drug-DNA interactions with Markov-Mean-Energy invariants of biopolymer molecular-dynamic lattice networks.

Authors:  Lázaro Guillermo Pérez-Montoto; María Auxiliadora Dea-Ayuela; Francisco J Prado-Prado; Francisco Bolas-Fernández; Florencio M Ubeira; Humberto González-Díaz
Journal:  Polymer (Guildf)       Date:  2009-06-03       Impact factor: 4.430

2.  A 2D graphical representation of the sequences of DNA based on triplets and its application.

Authors:  Sai Zou; Lei Wang; Junfeng Wang
Journal:  EURASIP J Bioinform Syst Biol       Date:  2014-01-02

3.  Circular Helix-Like Curve: An Effective Tool of Biological Sequence Analysis and Comparison.

Authors:  Yushuang Li; Wenli Xiao
Journal:  Comput Math Methods Med       Date:  2016-06-14       Impact factor: 2.238

4.  A novel way to numerically characterize DNA sequences and its application.

Authors:  Ying Guo; Yan-Fang Wang; Sheng-Li Zhang
Journal:  Int J Quantum Chem       Date:  2010-11-03       Impact factor: 2.444

5.  Coronavirus phylogeny based on 2D graphical representation of DNA sequence.

Authors:  Bo Liao; Xuyu Xiang; Wen Zhu
Journal:  J Comput Chem       Date:  2006-08       Impact factor: 3.376

6.  A new method to analyze protein sequence similarity using Dynamic Time Warping.

Authors:  Wenbing Hou; Qiuhui Pan; Qianying Peng; Mingfeng He
Journal:  Genomics       Date:  2016-12-11       Impact factor: 5.736

7.  FEGS: a novel feature extraction model for protein sequences and its applications.

Authors:  Zengchao Mu; Ting Yu; Xiaoping Liu; Hongyu Zheng; Leyi Wei; Juntao Liu
Journal:  BMC Bioinformatics       Date:  2021-06-03       Impact factor: 3.169

8.  Coronavirus phylogeny based on triplets of nucleic acids bases.

Authors:  Bo Liao; Yanshu Liu; Renfa Li; Wen Zhu
Journal:  Chem Phys Lett       Date:  2006-02-20       Impact factor: 2.328

9.  Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices.

Authors:  Alcides Perez-Bello; Cristian Robert Munteanu; Florencio M Ubeira; Alexandre Lopes De Magalhães; Eugenio Uriarte; Humberto González-Díaz
Journal:  J Theor Biol       Date:  2008-10-17       Impact factor: 2.691

10.  Generalized lattice graphs for 2D-visualization of biological information.

Authors:  H González-Díaz; L G Pérez-Montoto; A Duardo-Sanchez; E Paniagua; S Vázquez-Prieto; R Vilas; M A Dea-Ayuela; F Bolas-Fernández; C R Munteanu; J Dorado; J Costas; F M Ubeira
Journal:  J Theor Biol       Date:  2009-07-29       Impact factor: 2.691

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