Literature DB >> 15185170

Meta-analysis of 13 genome scans reveals multiple cleft lip/palate genes with novel loci on 9q21 and 2q32-35.

Mary L Marazita1, Jeffrey C Murray, Andrew C Lidral, Mauricio Arcos-Burgos, Margaret E Cooper, Toby Goldstein, Brion S Maher, Sandra Daack-Hirsch, Rebecca Schultz, M Adela Mansilla, L Leigh Field, You-e Liu, Natalie Prescott, Sue Malcolm, Robin Winter, Ajit Ray, Lina Moreno, Consuelo Valencia, Katherine Neiswanger, Diego F Wyszynski, Joan E Bailey-Wilson, Hasan Albacha-Hejazi, Terri H Beaty, Iain McIntosh, Jacqueline B Hetmanski, Gökhan Tunçbilek, Matthew Edwards, Louise Harkin, Rodney Scott, Laurence G Roddick.   

Abstract

Isolated or nonsyndromic cleft lip with or without cleft palate (CL/P) is a common birth defect with a complex etiology. A 10-cM genome scan of 388 extended multiplex families with CL/P from seven diverse populations (2,551 genotyped individuals) revealed CL/P genes in six chromosomal regions, including a novel region at 9q21 (heterogeneity LOD score [HLOD]=6.6). In addition, meta-analyses with the addition of results from 186 more families (six populations; 1,033 genotyped individuals) showed genomewide significance for 10 more regions, including another novel region at 2q32-35 (P=.0004). These are the first genomewide significant linkage results ever reported for CL/P, and they represent an unprecedented demonstration of the power of linkage analysis to detect multiple genes simultaneously for a complex disorder.

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Year:  2004        PMID: 15185170      PMCID: PMC1216052          DOI: 10.1086/422475

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  42 in total

1.  Evidence for linkage of nonsyndromic cleft lip with or without cleft palate to a region on chromosome 2.

Authors:  Joanna S Zeiger; Jacqueline B Hetmanski; Terri H Beaty; Craig A VanderKolk; Diego F Wyszynski; Joan E Bailey-Wilson; Rosa Ortiz de Luna; Claudia Perandones; Marie M Tolarova; Terezie Mosby; Ricardo Bennun; Mabel Segovia; Pavel Calda; Elizabeth W Pugh; Kim Doheny; Iain McIntosh
Journal:  Eur J Hum Genet       Date:  2003-11       Impact factor: 4.246

2.  Mode of inheritance of nonsyndromic cleft lip with or without cleft palate: a reanalysis.

Authors:  L E Mitchell; N Risch
Journal:  Am J Hum Genet       Date:  1992-08       Impact factor: 11.025

3.  Association of genetic variation of the transforming growth factor-alpha gene with cleft lip and palate.

Authors:  H H Ardinger; K H Buetow; G I Bell; J Bardach; D R VanDemark; J C Murray
Journal:  Am J Hum Genet       Date:  1989-09       Impact factor: 11.025

4.  A general model for the genetic analysis of pedigree data.

Authors:  R C Elston; J Stewart
Journal:  Hum Hered       Date:  1971       Impact factor: 0.444

5.  A genome-wide scan for loci predisposing to non-syndromic cleft lip with or without cleft palate in two large Syrian families.

Authors:  Diego F Wyszynski; Hasan Albacha-Hejazi; Mohammed Aldirani; Moustafa Hammod; Hikmat Shkair; Ahmed Karam; Jehad Alashkar; Taura N Holmes; Elizabeth W Pugh; Kimberly F Doheny; Iain McIntosh; Terri H Beaty; Joan E Bailey-Wilson
Journal:  Am J Med Genet A       Date:  2003-12-01       Impact factor: 2.802

6.  TP63 mutation and clefting modifier genes in an EEC syndrome family.

Authors:  A K Ray; M L Marazita; R Pathak; C L Beever; M E Cooper; T Goldstein; D F Shaw; L L Field
Journal:  Clin Genet       Date:  2004-09       Impact factor: 4.438

7.  Identification of SATB2 as the cleft palate gene on 2q32-q33.

Authors:  David R FitzPatrick; Ian M Carr; Lorna McLaren; Jack P Leek; Patrick Wightman; Kathy Williamson; Philippe Gautier; Niolette McGill; Caroline Hayward; Helen Firth; Alex F Markham; Judy A Fantes; David T Bonthron
Journal:  Hum Mol Genet       Date:  2003-07-29       Impact factor: 6.150

8.  Suggestion of linkage of a major locus for nonsyndromic orofacial cleft with F13A and tentative assignment to chromosome 6.

Authors:  H Eiberg; D Bixler; L S Nielsen; P M Conneally; J Mohr
Journal:  Clin Genet       Date:  1987-08       Impact factor: 4.438

9.  Genome scan for loci involved in nonsyndromic cleft lip with or without cleft palate in families from West Bengal, India.

Authors:  L Leigh Field; Ajit K Ray; Margaret E Cooper; Toby Goldstein; Diana F Shaw; Mary L Marazita
Journal:  Am J Med Genet A       Date:  2004-10-15       Impact factor: 2.802

10.  Familial recurrence-pattern analysis of cleft lip with or without cleft palate.

Authors:  M Farrall; S Holder
Journal:  Am J Hum Genet       Date:  1992-02       Impact factor: 11.025

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  90 in total

1.  The FGF and FGFR Gene Family and Risk of Cleft Lip With or Without Cleft Palate.

Authors:  Hong Wang; Tianxiao Zhang; Tao Wu; Jacqueline B Hetmanski; Ingo Ruczinski; Holger Schwender; Kung Yee Liang; Tanda Murray; M Daniele Fallin; Richard J Redett; Gerald V Raymond; Sheng-Chih Jin; Yah-Huei Wu Chou; Philip Kuo-Ting Chen; Vincent Yeow; Samuel S Chong; Felicia S H Cheah; Sun Ha Jee; Ethylin W Jabs; Alan F Scott; Terri H Beaty
Journal:  Cleft Palate Craniofac J       Date:  2011-11-10

2.  Candidate pathway based analysis for cleft lip with or without cleft palate.

Authors:  Tian-Xiao Zhang; Terri H Beaty; Ingo Ruczinski
Journal:  Stat Appl Genet Mol Biol       Date:  2012-01-06

3.  Novel evidence of association with nonsyndromic cleft lip with or without cleft palate was shown for single nucleotide polymorphisms in FOXF2 gene in an Asian population.

Authors:  Lingxue Bu; Qianqian Chen; Hong Wang; Tianxiao Zhang; Jacqueline B Hetmanski; Holger Schwender; Margaret Parker; Yah-Huei Wu Chou; Vincent Yeow; Samuel S Chong; Bo Zhang; Ethylin Wang Jabs; Alan F Scott; Terri H Beaty
Journal:  Birth Defects Res A Clin Mol Teratol       Date:  2015-08-17

Review 4.  Orofacial clefting: recent insights into a complex trait.

Authors:  Astanand Jugessur; Jeffrey C Murray
Journal:  Curr Opin Genet Dev       Date:  2005-06       Impact factor: 5.578

5.  Genome-wide meta-analysis for rheumatoid arthritis.

Authors:  Carol J Etzel; Wei V Chen; Neil Shepard; Damini Jawaheer; Francois Cornelis; Michael F Seldin; Peter K Gregersen; Christopher I Amos
Journal:  Hum Genet       Date:  2006-04-13       Impact factor: 4.132

6.  Impaired FGF signaling contributes to cleft lip and palate.

Authors:  Bridget M Riley; M Adela Mansilla; Jinghong Ma; Sandra Daack-Hirsch; Brion S Maher; Lisa M Raffensperger; Erilynn T Russo; Alexandre R Vieira; Catherine Dodé; Moosa Mohammadi; Mary L Marazita; Jeffrey C Murray
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-06       Impact factor: 11.205

7.  A genome-wide linkage scan for cleft lip and cleft palate identifies a novel locus on 8p11-23.

Authors:  B M Riley; R E Schultz; M E Cooper; T Goldstein-McHenry; S Daack-Hirsch; K T Lee; E Dragan; A R Vieira; A C Lidral; M L Marazita; J C Murray
Journal:  Am J Med Genet A       Date:  2007-04-15       Impact factor: 2.802

8.  Practical considerations for dividing data into subsets prior to PPL analysis.

Authors:  M Govil; V J Vieland
Journal:  Hum Hered       Date:  2008-07-09       Impact factor: 0.444

9.  Identification of novel candidate genes associated with cleft lip and palate using array comparative genomic hybridisation.

Authors:  K Osoegawa; G M Vessere; K H Utami; M A Mansilla; M K Johnson; B M Riley; J L'Heureux; R Pfundt; J Staaf; W A van der Vliet; A C Lidral; E F P M Schoenmakers; A Borg; B C Schutte; E J Lammer; J C Murray; P J de Jong
Journal:  J Med Genet       Date:  2007-09-14       Impact factor: 6.318

10.  FOXE1 association with both isolated cleft lip with or without cleft palate, and isolated cleft palate.

Authors:  Lina M Moreno; Maria Adela Mansilla; Steve A Bullard; Margaret E Cooper; Tamara D Busch; Junichiro Machida; Marla K Johnson; David Brauer; Katherine Krahn; Sandy Daack-Hirsch; Jamie L'heureux; Consuelo Valencia-Ramirez; Dora Rivera; Ana Maria López; Manuel A Moreno; Anne Hing; Edward J Lammer; Marilyn Jones; Kaare Christensen; Rolv T Lie; Astanand Jugessur; Allen J Wilcox; Peter Chines; Elizabeth Pugh; Kim Doheny; Mauricio Arcos-Burgos; Mary L Marazita; Jeffrey C Murray; Andrew C Lidral
Journal:  Hum Mol Genet       Date:  2009-09-24       Impact factor: 6.150

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