Literature DB >> 15182811

QSAR and QSPR based solely on surface properties?

Timothy Clark1.   

Abstract

The use of descriptors based on local properties calculated at the molecular surface for QSPR models is discussed. It is suggested that descriptors should be related to the physical theory of intermolecular interactions and the relationship between established surface-based descriptors and the fundamental types of intermolecular interaction is discussed. Descriptors based on local properties that do not encode the chemical constitution of the molecule directly are likely to provide less local QSPR models and favor scaffold hopping. The major disadvantage for surface-based descriptors is that they are difficult to interpret in the sense of relating predictions to the chemical composition of the molecule. This disadvantage must be alleviated by suitable model-interrogation techniques.

Mesh:

Year:  2004        PMID: 15182811     DOI: 10.1016/j.jmgm.2004.03.012

Source DB:  PubMed          Journal:  J Mol Graph Model        ISSN: 1093-3263            Impact factor:   2.518


  7 in total

1.  Pattern recognition based on color-coded quantum mechanical surfaces for molecular alignment.

Authors:  Brian D Hudson; David C Whitley; Martyn G Ford; Martin Swain; Jonathan W Essex
Journal:  J Mol Model       Date:  2007-11-24       Impact factor: 1.810

2.  LASSO-ligand activity by surface similarity order: a new tool for ligand based virtual screening.

Authors:  Darryl Reid; Bashir S Sadjad; Zsolt Zsoldos; Aniko Simon
Journal:  J Comput Aided Mol Des       Date:  2008-01-18       Impact factor: 3.686

3.  An efficient and accurate molecular alignment and docking technique using ab initio quality scoring.

Authors:  László Füsti-Molnár; Kenneth M Merz
Journal:  J Chem Phys       Date:  2008-07-14       Impact factor: 3.488

4.  The local electron affinity for non-minimal basis sets.

Authors:  Timothy Clark
Journal:  J Mol Model       Date:  2010-01-10       Impact factor: 1.810

5.  The use of local surface properties for molecular superimposition.

Authors:  David T Manallack
Journal:  J Mol Model       Date:  2008-05-24       Impact factor: 1.810

6.  The unrestricted local properties: application in nanoelectronics and for predicting radicals reactivity.

Authors:  Pavlo O Dral
Journal:  J Mol Model       Date:  2014-02-16       Impact factor: 1.810

7.  Alpha shapes applied to molecular shape characterization exhibit novel properties compared to established shape descriptors.

Authors:  J Anthony Wilson; Andreas Bender; Taner Kaya; Paul A Clemons
Journal:  J Chem Inf Model       Date:  2009-10       Impact factor: 4.956

  7 in total

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