Literature DB >> 15177695

Incorrectly predicted genes in rice?

Stéphane Cruveiller1, Kamel Jabbari, Oliver Clay, Giorgio Bernardi.   

Abstract

Between one third and one half of the proposed rice genes appear to have no homologs in other species, including Arabidopsis. Compositional considerations, and a comparison of curated rice sequences with ex novo predictions, suggest that many or most of the putative genes without homologs may be false positive predictions, i.e., sequences that are never translated into functional proteins in vivo.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15177695     DOI: 10.1016/j.gene.2004.02.039

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  6 in total

1.  Compositional gene landscapes in vertebrates.

Authors:  Stéphane Cruveiller; Kamel Jabbari; Oliver Clay; Giorgio Bernardi
Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

2.  Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries.

Authors:  Takashi Matsumoto; Tsuyoshi Tanaka; Hiroaki Sakai; Naoki Amano; Hiroyuki Kanamori; Kanako Kurita; Ari Kikuta; Kozue Kamiya; Mayu Yamamoto; Hiroshi Ikawa; Nobuyuki Fujii; Kiyosumi Hori; Takeshi Itoh; Kazuhiro Sato
Journal:  Plant Physiol       Date:  2011-03-17       Impact factor: 8.340

3.  Differentiation of the two rice subspecies indica and japonica: a Gene Ontology perspective.

Authors:  Mitrick A Johns; Long Mao
Journal:  Funct Integr Genomics       Date:  2006-11-28       Impact factor: 3.410

4.  Efficient plant gene identification based on interspecies mapping of full-length cDNAs.

Authors:  Naoki Amano; Tsuyoshi Tanaka; Hisataka Numa; Hiroaki Sakai; Takeshi Itoh
Journal:  DNA Res       Date:  2010-07-28       Impact factor: 4.458

5.  Significant comparative characteristics between orphan and nonorphan genes in the rice (Oryza sativa L.) genome.

Authors:  Wen-Jiu Guo; Ping Li; Jun Ling; Shao-Ping Ye
Journal:  Comp Funct Genomics       Date:  2007

6.  Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants.

Authors:  Matthieu G Conte; Sylvain Gaillard; Gaetan Droc; Christophe Perin
Journal:  BMC Genomics       Date:  2008-04-21       Impact factor: 3.969

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.