Literature DB >> 15175656

Positive and negative regulation of SMC-DNA interactions by ATP and accessory proteins.

Michiko Hirano1, Tatsuya Hirano.   

Abstract

Structural maintenance of chromosomes (SMC) proteins are central regulators of higher-order chromosome dynamics from bacteria to humans. The Bacillus subtilis SMC (BsSMC) homodimer adopts a V-shaped structure with an ATP-binding catalytic domain at each end. We report here that two small proteins, ScpA and ScpB, associate with the catalytic domains of BsSMC in an ordered fashion and suppress its ATPase activity. When combined with a 'transition state' mutant of BsSMC that poorly hydrolyzes ATP, ScpA promotes stable engagement of two catalytic domains in an ATP-dependent manner. In solution, this occurs intramolecularly and closes the DNA-entry gate of an SMC dimer. ScpB further stabilizes this conformation and prevents BsSMC from binding to double-stranded DNA (dsDNA). In contrast, when the mutant BsSMC is first allowed to interact with dsDNA, subsequent addition of ScpA leads to assembly of large nucleoprotein complexes, possibly by stabilizing intermolecular engagement of the catalytic domains from different SMC dimers. We propose that the ATP-modulated engagement/disengagement cycle of SMC proteins plays both positive and negative roles in their dynamic interactions with dsDNA.

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Year:  2004        PMID: 15175656      PMCID: PMC449774          DOI: 10.1038/sj.emboj.7600264

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  48 in total

Review 1.  ABC-ATPases, adaptable energy generators fuelling transmembrane movement of a variety of molecules in organisms from bacteria to humans.

Authors:  I B Holland; M A Blight
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

2.  Structural biology of Rad50 ATPase: ATP-driven conformational control in DNA double-strand break repair and the ABC-ATPase superfamily.

Authors:  K P Hopfner; A Karcher; D S Shin; L Craig; L M Arthur; J P Carney; J A Tainer
Journal:  Cell       Date:  2000-06-23       Impact factor: 41.582

3.  Bimodal activation of SMC ATPase by intra- and inter-molecular interactions.

Authors:  M Hirano; D E Anderson; H P Erickson; T Hirano
Journal:  EMBO J       Date:  2001-06-15       Impact factor: 11.598

4.  Dual roles of the 11S regulatory subcomplex in condensin functions.

Authors:  K Kimura; T Hirano
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

5.  Fission yeast Eso1p is required for establishing sister chromatid cohesion during S phase.

Authors:  K Tanaka; T Yonekawa; Y Kawasaki; M Kai; K Furuya; M Iwasaki; H Murakami; M Yanagida; H Okayama
Journal:  Mol Cell Biol       Date:  2000-05       Impact factor: 4.272

6.  Characterization of fission yeast cohesin: essential anaphase proteolysis of Rad21 phosphorylated in the S phase.

Authors:  T Tomonaga; K Nagao; Y Kawasaki; K Furuya; A Murakami; J Morishita; T Yuasa; T Sutani; S E Kearsey; F Uhlmann; K Nasmyth; M Yanagida
Journal:  Genes Dev       Date:  2000-11-01       Impact factor: 11.361

7.  Discovery of two novel families of proteins that are proposed to interact with prokaryotic SMC proteins, and characterization of the Bacillus subtilis family members ScpA and ScpB.

Authors:  Jörg Soppa; Kazuo Kobayashi; Marie-Françoise Noirot-Gros; Dieter Oesterhelt; S Dusko Ehrlich; Etienne Dervyn; Naotake Ogasawara; Shigeki Moriya
Journal:  Mol Microbiol       Date:  2002-07       Impact factor: 3.501

8.  Trapping the transition state of an ATP-binding cassette transporter: evidence for a concerted mechanism of maltose transport.

Authors:  J Chen; S Sharma; F A Quiocho; A L Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-06       Impact factor: 11.205

9.  Condensin and cohesin display different arm conformations with characteristic hinge angles.

Authors:  David E Anderson; Ana Losada; Harold P Erickson; Tatsuya Hirano
Journal:  J Cell Biol       Date:  2002-01-28       Impact factor: 10.539

10.  The condensin complex governs chromosome condensation and mitotic transmission of rDNA.

Authors:  L Freeman; L Aragon-Alcaide; A Strunnikov
Journal:  J Cell Biol       Date:  2000-05-15       Impact factor: 10.539

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  58 in total

1.  Using DNA as a fiducial marker to study SMC complex interactions with the atomic force microscope.

Authors:  M E Fuentes-Perez; E J Gwynn; M S Dillingham; F Moreno-Herrero
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

2.  The Escherichia coli SMC complex, MukBEF, shapes nucleoid organization independently of DNA replication.

Authors:  Anjana Badrinarayanan; Christian Lesterlin; Rodrigo Reyes-Lamothe; David Sherratt
Journal:  J Bacteriol       Date:  2012-06-29       Impact factor: 3.490

3.  Mechanism of cohesin loading onto chromosomes: a conformational dynamics study.

Authors:  Ozge Kurkcuoglu; Paul A Bates
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

4.  RecN is a cohesin-like protein that stimulates intermolecular DNA interactions in vitro.

Authors:  Emigdio D Reyes; Praveen L Patidar; Lee A Uranga; Angelina S Bortoletto; Shelley L Lusetti
Journal:  J Biol Chem       Date:  2010-03-31       Impact factor: 5.157

Review 5.  SMC complexes in bacterial chromosome condensation and segregation.

Authors:  Alexander V Strunnikov
Journal:  Plasmid       Date:  2005-10-17       Impact factor: 3.466

Review 6.  SMC proteins and chromosome mechanics: from bacteria to humans.

Authors:  Tatsuya Hirano
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-03-29       Impact factor: 6.237

7.  Focus on recombinational DNA repair.

Authors:  Lorraine S Symington
Journal:  EMBO Rep       Date:  2005-06       Impact factor: 8.807

8.  DNA reshaping by MukB. Right-handed knotting, left-handed supercoiling.

Authors:  Zoya M Petrushenko; Chien-Hung Lai; Rachna Rai; Valentin V Rybenkov
Journal:  J Biol Chem       Date:  2005-12-20       Impact factor: 5.157

9.  Chromosome condensation in the absence of the non-SMC subunits of MukBEF.

Authors:  Qinhong Wang; Elena A Mordukhova; Andrea L Edwards; Valentin V Rybenkov
Journal:  J Bacteriol       Date:  2006-06       Impact factor: 3.490

10.  Pseudomonas aeruginosa Condensins Support Opposite Differentiation States.

Authors:  Hang Zhao; April L Clevenger; Jerry W Ritchey; Helen I Zgurskaya; Valentin V Rybenkov
Journal:  J Bacteriol       Date:  2016-10-07       Impact factor: 3.490

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