Literature DB >> 15174125

PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation.

Peter V Hornbeck1, Indy Chabra, Jon M Kornhauser, Elzbieta Skrzypek, Bin Zhang.   

Abstract

PhosphoSite is a curated, web-based bioinformatics resource dedicated to physiologic sites of protein phosphorylation in human and mouse. PhosphoSite is populated with information derived from published literature as well as high-throughput discovery programs. PhosphoSite provides information about the phosphorylated residue and its surrounding sequence, orthologous sites in other species, location of the site within known domains and motifs, and relevant literature references. Links are also provided to a number of external resources for protein sequences, structure, post-translational modifications and signaling pathways, as well as sources of phospho-specific antibodies and probes. As the amount of information in the underlying knowledgebase expands, users will be able to systematically search for the kinases, phosphatases, ligands, treatments, and receptors that have been shown to regulate the phosphorylation status of the sites, and pathways in which the phosphorylation sites function. As it develops into a comprehensive resource of known in vivo phosphorylation sites, we expect that PhosphoSite will be a valuable tool for researchers seeking to understand the role of intracellular signaling pathways in a wide variety of biological processes.

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Year:  2004        PMID: 15174125     DOI: 10.1002/pmic.200300772

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  278 in total

1.  Polarity-regulating kinase partitioning-defective 1b (PAR1b) phosphorylates guanine nucleotide exchange factor H1 (GEF-H1) to regulate RhoA-dependent actin cytoskeletal reorganization.

Authors:  Yukie Yamahashi; Yasuhiro Saito; Naoko Murata-Kamiya; Masanori Hatakeyama
Journal:  J Biol Chem       Date:  2011-11-09       Impact factor: 5.157

Review 2.  Activity regulation of adenosine deaminases acting on RNA (ADARs).

Authors:  Cesare Orlandi; Alessandro Barbon; Sergio Barlati
Journal:  Mol Neurobiol       Date:  2011-11-20       Impact factor: 5.590

3.  Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers.

Authors:  Edward Y Chen; Huilei Xu; Simon Gordonov; Maribel P Lim; Matthew H Perkins; Avi Ma'ayan
Journal:  Bioinformatics       Date:  2011-11-10       Impact factor: 6.937

Review 4.  Insights into phosphorylation-dependent mechanisms regulating USP1 protein stability during the cell cycle.

Authors:  Xiomaris M Cotto-Rios; Mathew J K Jones; Tony T Huang
Journal:  Cell Cycle       Date:  2011-12-01       Impact factor: 4.534

Review 5.  Aminoacyl-tRNA synthetases and tumorigenesis: more than housekeeping.

Authors:  Sunghoon Kim; Sungyong You; Daehee Hwang
Journal:  Nat Rev Cancer       Date:  2011-09-23       Impact factor: 60.716

6.  Large-scale phosphotyrosine proteomic profiling of rat renal collecting duct epithelium reveals predominance of proteins involved in cell polarity determination.

Authors:  Boyang Zhao; Mark A Knepper; Chung-Lin Chou; Trairak Pisitkun
Journal:  Am J Physiol Cell Physiol       Date:  2011-09-21       Impact factor: 4.249

7.  Akt-RSK-S6 kinase signaling networks activated by oncogenic receptor tyrosine kinases.

Authors:  Albrecht Moritz; Yu Li; Ailan Guo; Judit Villén; Yi Wang; Joan MacNeill; Jon Kornhauser; Kam Sprott; Jing Zhou; Anthony Possemato; Jian Min Ren; Peter Hornbeck; Lewis C Cantley; Steven P Gygi; John Rush; Michael J Comb
Journal:  Sci Signal       Date:  2010-08-24       Impact factor: 8.192

8.  PTMScout, a Web resource for analysis of high throughput post-translational proteomics studies.

Authors:  Kristen M Naegle; Melissa Gymrek; Brian A Joughin; Joel P Wagner; Roy E Welsch; Michael B Yaffe; Douglas A Lauffenburger; Forest M White
Journal:  Mol Cell Proteomics       Date:  2010-07-14       Impact factor: 5.911

9.  Adrenergic signaling regulates mitochondrial Ca2+ uptake through Pyk2-dependent tyrosine phosphorylation of the mitochondrial Ca2+ uniporter.

Authors:  Jin O-Uchi; Bong Sook Jhun; Shangcheng Xu; Stephen Hurst; Anna Raffaello; Xiaoyun Liu; Bing Yi; Huiliang Zhang; Polina Gross; Jyotsna Mishra; Alina Ainbinder; Sarah Kettlewell; Godfrey L Smith; Robert T Dirksen; Wang Wang; Rosario Rizzuto; Shey-Shing Sheu
Journal:  Antioxid Redox Signal       Date:  2014-06-25       Impact factor: 8.401

10.  Mass spectrometry-based identification of native cardiac Nav1.5 channel α subunit phosphorylation sites.

Authors:  Céline Marionneau; Cheryl F Lichti; Pierre Lindenbaum; Flavien Charpentier; Jeanne M Nerbonne; R Reid Townsend; Jean Mérot
Journal:  J Proteome Res       Date:  2012-11-09       Impact factor: 4.466

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