Literature DB >> 15159562

More rapid evaluation of biomacromolecular crystals for diffraction experiments.

Shigeki Arai1, Toshiyuki Chatake, Nobuhiro Suzuki, Hiroshi Mizuno, Nobuo Niimura.   

Abstract

The parameters used to evaluate biomacromolecular crystal quality [Rmerge, I/sigma(I), maximum resolution and mosaicity] strongly depend on the experimental diffraction conditions. In this paper, the distinctive features of the relative Wilson plot method are described and it is shown that the overall B factor obtained from this plot is more appropriate for the characterization of protein crystals. The relative Wilson plot has been applied to the characterization of crystals of the B-DNA decamer d(CCATTAATGG) and crystals of the proteins DsrD (dissimilatory sulfite reductase D) and hen egg-white lysozyme (HEWL), which were studied by neutron diffraction. It was found that the crystal quality of the B-DNA decamer and DsrD depended significantly on the regions of the crystallization phase diagram from which the samples were taken. However, in the case of HEWL crystal quality appears to be independent of the region of the crystallization phase diagram. Copyright 2004 International Union of Crystallography

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Year:  2004        PMID: 15159562     DOI: 10.1107/S0907444904006559

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  4 in total

1.  X-ray structure of perdeuterated diisopropyl fluorophosphatase (DFPase): perdeuteration of proteins for neutron diffraction.

Authors:  Marc Michael Blum; Stephen J Tomanicek; Harald John; B Leif Hanson; Heinz Rüterjans; Benno P Schoenborn; Paul Langan; Julian C H Chen
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-26

2.  Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements.

Authors:  Shigeki Arai; Toshiyuki Chatake; Takashi Ohhara; Kazuo Kurihara; Ichiro Tanaka; Nobuhiro Suzuki; Zui Fujimoto; Hiroshi Mizuno; Nobuo Niimura
Journal:  Nucleic Acids Res       Date:  2005-05-24       Impact factor: 16.971

3.  On the use of logarithmic scales for analysis of diffraction data.

Authors:  Alexandre Urzhumtsev; Pavel V Afonine; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-11-17

4.  Crystallization and evaluation of hen egg-white lysozyme crystals for protein pH titration in the crystalline state.

Authors:  Wakari Iwai; Daichi Yagi; Takuya Ishikawa; Yuki Ohnishi; Ichiro Tanaka; Nobuo Niimura
Journal:  J Synchrotron Radiat       Date:  2008-04-18       Impact factor: 2.616

  4 in total

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