Literature DB >> 15154773

Theoretical scales of hydrogen bond acidity and basicity for application in QSAR/QSPR studies and drug design. Partitioning of aliphatic compounds.

Alexander A Oliferenko1, Polina V Oliferenko, Jonathan G Huddleston, Robin D Rogers, Vladimir A Palyulin, Nikolai S Zefirov, Alan R Katritzky.   

Abstract

Phenomenological analysis of existing hydrogen bond (HB) donor and acceptor scales and apparent physical considerations have enabled the establishment of new quantitative scales of hydrogen bond basicity and acidity. Chemical structures represented by molecular graphs and the orbital electronegativities of Hinze and Jaffe are utilized as an input data. The scales obtained correlate well with several experimental solvent polarity scales such as and, pK(HB), and E(T)(30). To demonstrate the applicability of the new quantities, we have applied them to seven equilibrium partitioning data sets: octanol-water, hexadecane-water, chloroform-water, gas-water, gas-octanol, gas-hexadecane, and gas-chloroform partition coefficients. The hydrogen bond descriptors when supplemented by a cavity-forming term and a dipolarity term show high performance in correlations of the partition coefficients of aliphatic compounds. These new HB descriptors can be used in studying hydrogen bonding and fluid phase equilibria as well as scoring functions in ligand docking and descriptors in ADME evaluations.

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Year:  2004        PMID: 15154773     DOI: 10.1021/ci0342932

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN: 0095-2338


  3 in total

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Journal:  J Mol Model       Date:  2011-03-31       Impact factor: 1.810

2.  Extraction and recovery of phytochemical components and antioxidative properties in fruit parts of Dacryodes rostrata influenced by different solvents.

Authors:  Nisha Thavamoney; Leykkha Sivanadian; Lee Hong Tee; Hock Eng Khoo; Krishnamurthy Nagendra Prasad; Kin Weng Kong
Journal:  J Food Sci Technol       Date:  2018-05-02       Impact factor: 2.701

3.  Machine learning models for hydrogen bond donor and acceptor strengths using large and diverse training data generated by first-principles interaction free energies.

Authors:  Christoph A Bauer; Gisbert Schneider; Andreas H Göller
Journal:  J Cheminform       Date:  2019-09-11       Impact factor: 5.514

  3 in total

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