Literature DB >> 15153998

Comparative genomics at the vertebrate extremes.

Dario Boffelli1, Marcelo A Nobrega, Edward M Rubin.   

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Year:  2004        PMID： 15153998     DOI： 10.1038/nrg1350

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN： 1471-0056            Impact factor:   53.242


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  104 in total

1.  An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement.

Authors:  Ignacio Maeso; Manuel Irimia; Juan J Tena; Esther González-Pérez; David Tran; Vydianathan Ravi; Byrappa Venkatesh; Sonsoles Campuzano; José Luis Gómez-Skarmeta; Jordi Garcia-Fernàndez
Journal:  Genome Res       Date:  2012-01-10       Impact factor: 9.043

2.  Long identical multispecies elements in plant and animal genomes.

Authors:  Jeff Reneker; Eric Lyons; Gavin C Conant; J Chris Pires; Michael Freeling; Chi-Ren Shyu; Dmitry Korkin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-10       Impact factor: 11.205

3.  Histone H3K27ac separates active from poised enhancers and predicts developmental state.

Authors:  Menno P Creyghton; Albert W Cheng; G Grant Welstead; Tristan Kooistra; Bryce W Carey; Eveline J Steine; Jacob Hanna; Michael A Lodato; Garrett M Frampton; Phillip A Sharp; Laurie A Boyer; Richard A Young; Rudolf Jaenisch
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-24       Impact factor: 11.205

4.  Comparative genomic analysis reveals a distant liver enhancer upstream of the COUP-TFII gene.

Authors:  Nadine Baroukh; Nadav Ahituv; Jessie Chang; Malak Shoukry; Veena Afzal; Edward M Rubin; Len A Pennacchio
Journal:  Mamm Genome       Date:  2005-02       Impact factor: 2.957

5.  Subtree power analysis and species selection for comparative genomics.

Authors:  Jon D McAuliffe; Michael I Jordan; Lior Pachter
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-23       Impact factor: 11.205

6.  Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences.

Authors:  Jim R Hughes; Jan-Fang Cheng; Nicki Ventress; Shyam Prabhakar; Kevin Clark; Eduardo Anguita; Marco De Gobbi; Pieter de Jong; Eddy Rubin; Douglas R Higgs
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-05       Impact factor: 11.205

7.  The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator.

Authors:  Jianchi Feng; Chunming Bi; Brian S Clark; Rina Mady; Palak Shah; Jhumku D Kohtz
Journal:  Genes Dev       Date:  2006-05-16       Impact factor: 11.361

Review 8.  Enhancer identification through comparative genomics.

Authors:  Axel Visel; James Bristow; Len A Pennacchio
Journal:  Semin Cell Dev Biol       Date:  2007-01-05       Impact factor: 7.727

9.  Identification and analysis of a conserved Tcfap2a intronic enhancer element required for expression in facial and limb bud mesenchyme.

Authors:  Weiguo Feng; Jian Huang; Jian Zhang; Trevor Williams
Journal:  Mol Cell Biol       Date:  2007-11-05       Impact factor: 4.272

10.  Widely distributed noncoding purifying selection in the human genome.

Authors:  Saurabh Asthana; William S Noble; Gregory Kryukov; Charles E Grant; Shamil Sunyaev; John A Stamatoyannopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-17       Impact factor: 11.205
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