Literature DB >> 15153678

Update of mouse microsatellite database of Japan (MMDBJ).

Takahiro Sakai1, Ikuo Miura, Satomi Yamada-Ishibashi, Yayoi Wakita, Yuki Kohara, Yukiko Yamazaki, Takeshi Inoue, Ryo Kominami, Kazuo Moriwaki, Toshihiko Shiroishi, Hiromichi Yonekawa, Yoshiaki Kikkawa.   

Abstract

We updated a database of microsatellite marker polymorphisms found in inbred strains of the mouse, most of which were derived from the wild stocks of four Mus musculus subspecies, M. m. domesticus, M. m. musculus, M. m.castaneus and M. m. molossinus. The major aim of constructing this database was to establish the genetic status of these inbred strains as resources for linkage analysis and positional cloning. The inbred strains incorporated in our database are A/J, C57BL/6J, CBA/J, DBA/2J, SM/J, SWR/J, 129Sv/J, MSM/Ms, JF1/Ms, CAST/Ei, NC/Nga, BLG2/Ms, NJL/Ms, PGN2/Ms, SK/CamEi and SWN/Ms, which have not or have only been poorly incorporated in the Whitehead Institute/MIT (WI/MIT) microsatellite database. The number of polymorphic microsatellite loci incorporated in our database is over 1,000 in all strains, and the URL site for our database is located at http:// www.shigen.nig.ac.jp /mouse/mmdbj/mouse.html.

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Year:  2004        PMID: 15153678     DOI: 10.1538/expanim.53.151

Source DB:  PubMed          Journal:  Exp Anim        ISSN: 0007-5124


  7 in total

1.  Origins of mouse inbred strains deduced from whole-genome scanning by polymorphic microsatellite loci.

Authors:  Takahiro Sakai; Yoshiaki Kikkawa; Ikuo Miura; Takeshi Inoue; Kazuo Moriwaki; Toshihiko Shiroishi; Yoko Satta; Naoyuki Takahata; Hiromichi Yonekawa
Journal:  Mamm Genome       Date:  2005-01       Impact factor: 2.957

2.  An online conserved SSR discovery through cross-species comparison.

Authors:  Tun-Wen Pai; Chien-Ming Chen; Meng-Chang Hsiao; Ronshan Cheng; Wen-Shyong Tzou; Chin-Hua Hu
Journal:  Adv Appl Bioinform Chem       Date:  2009-02-08

3.  Validation of simple sequence length polymorphism regions of commonly used mouse strains for marker assisted speed congenics screening.

Authors:  Channabasavaiah B Gurumurthy; Poonam S Joshi; Scott G Kurz; Masato Ohtsuka; Rolen M Quadros; Donald W Harms; K C Kent Lloyd
Journal:  Int J Genomics       Date:  2015-02-28       Impact factor: 2.326

4.  Genome-wide mapping and characterization of microsatellites in the swamp eel genome.

Authors:  Zhigang Li; Feng Chen; Chunhua Huang; Weixin Zheng; Chunlai Yu; Hanhua Cheng; Rongjia Zhou
Journal:  Sci Rep       Date:  2017-06-09       Impact factor: 4.379

5.  MICdb3.0: a comprehensive resource of microsatellite repeats from prokaryotic genomes.

Authors:  Suresh B Mudunuri; Sujan Patnana; Hampapathalu A Nagarajaram
Journal:  Database (Oxford)       Date:  2014-02-17       Impact factor: 3.451

6.  FishMicrosat: a microsatellite database of commercially important fishes and shellfishes of the Indian subcontinent.

Authors:  Naresh Sahebrao Nagpure; Iliyas Rashid; Rameshwar Pati; Ajey Kumar Pathak; Mahender Singh; Shri Prakash Singh; Uttam Kumar Sarkar
Journal:  BMC Genomics       Date:  2013-09-18       Impact factor: 3.969

7.  Mice produced by mitotic reprogramming of sperm injected into haploid parthenogenotes.

Authors:  Toru Suzuki; Maki Asami; Martin Hoffmann; Xin Lu; Miodrag Gužvić; Christoph A Klein; Anthony C F Perry
Journal:  Nat Commun       Date:  2016-09-13       Impact factor: 14.919

  7 in total

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