Literature DB >> 15152602

Isolation of high-quality RNA from gymnosperm and angiosperm trees.

Natalia Kolosova1, Barbara Miller, Steven Ralph, Brian E Ellis, Carl Douglas, Kermit Ritland, Jörg Bohlmann.   

Abstract

An improved protocol was developed for efficient and reliable extraction of high-quality total RNA and mRNA from various tissues of spruce (Picea spp.) and poplar (Populus spp.) trees, as well as other plant species. This method was specifically optimized for tissues with high content of polysaccharides, oleoresin terpenoids, and phenolic secondary metabolites, which often co-precipitate with RNA and inhibit subsequent reverse transcription. The improved protocol yielded up to 600 micrograms of total RNA per gram of tissue suitable for standard expressed sequence tags (ESTs), full-length cDNA library construction, and for microarray applications.

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Year:  2004        PMID: 15152602     DOI: 10.2144/04365ST06

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  52 in total

1.  Testing of a heterologous, wound- and insect-inducible promoter for functional genomics studies in conifer defense.

Authors:  Kimberley-Ann Godard; Ashley Byun-McKay; Caroline Levasseur; Aine Plant; Armand Séguin; Jörg Bohlmann
Journal:  Plant Cell Rep       Date:  2007-08-02       Impact factor: 4.570

2.  Insect-induced conifer defense. White pine weevil and methyl jasmonate induce traumatic resinosis, de novo formed volatile emissions, and accumulation of terpenoid synthase and putative octadecanoid pathway transcripts in Sitka spruce.

Authors:  Barbara Miller; Lufiani L Madilao; Steven Ralph; Jörg Bohlmann
Journal:  Plant Physiol       Date:  2004-12-23       Impact factor: 8.340

3.  Seasonal and cell type specific expression of sulfate transporters in the phloem of Populus reveals tree specific characteristics for SO(4)(2-) storage and mobilization.

Authors:  Jasmin Dürr; Heike Bücking; Susanne Mult; Henning Wildhagen; Klaus Palme; Heinz Rennenberg; Franck Ditengou; Cornelia Herschbach
Journal:  Plant Mol Biol       Date:  2010-01-20       Impact factor: 4.076

4.  Drought-Enhanced Xylem Sap Sulfate Closes Stomata by Affecting ALMT12 and Guard Cell ABA Synthesis.

Authors:  Frosina Malcheska; Altaf Ahmad; Sundas Batool; Heike M Müller; Jutta Ludwig-Müller; Jürgen Kreuzwieser; Dörte Randewig; Robert Hänsch; Ralf R Mendel; Rüdiger Hell; Markus Wirtz; Dietmar Geiger; Peter Ache; Rainer Hedrich; Cornelia Herschbach; Heinz Rennenberg
Journal:  Plant Physiol       Date:  2017-04-26       Impact factor: 8.340

5.  Biosynthesis of the microtubule-destabilizing diterpene pseudolaric acid B from golden larch involves an unusual diterpene synthase.

Authors:  Sibongile Mafu; Prema Sambandaswami Karunanithi; Teresa Ann Palazzo; Bronwyn Lee Harrod; Selina Marakana Rodriguez; Iris Natalie Mollhoff; Terrence Edward O'Brien; Shen Tong; Oliver Fiehn; Dean J Tantillo; Jörg Bohlmann; Philipp Zerbe
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

6.  Identification of genes in Thuja plicata foliar terpenoid defenses.

Authors:  Adam J Foster; Dawn E Hall; Leanne Mortimer; Shelley Abercromby; Regine Gries; Gerhard Gries; Jörg Bohlmann; John Russell; Jim Mattsson
Journal:  Plant Physiol       Date:  2013-02-06       Impact factor: 8.340

7.  Flavan-3-ols in Norway spruce: biosynthesis, accumulation, and function in response to attack by the bark beetle-associated fungus Ceratocystis polonica.

Authors:  Almuth Hammerbacher; Christian Paetz; Louwrance P Wright; Thilo C Fischer; Joerg Bohlmann; Andrew J Davis; Trevor M Fenning; Jonathan Gershenzon; Axel Schmidt
Journal:  Plant Physiol       Date:  2014-02-18       Impact factor: 8.340

8.  Extraction of high quality RNA from polysaccharide matrices using cetyltrimethylammonium bromide.

Authors:  Limin Wang; Jan P Stegemann
Journal:  Biomaterials       Date:  2009-12-03       Impact factor: 12.479

9.  Gene discovery of modular diterpene metabolism in nonmodel systems.

Authors:  Philipp Zerbe; Björn Hamberger; Macaire M S Yuen; Angela Chiang; Harpreet K Sandhu; Lina L Madilao; Anh Nguyen; Britta Hamberger; Søren Spanner Bach; Jörg Bohlmann
Journal:  Plant Physiol       Date:  2013-04-23       Impact factor: 8.340

10.  Sucrose synthase affects carbon partitioning to increase cellulose production and altered cell wall ultrastructure.

Authors:  Heather D Coleman; Jimmy Yan; Shawn D Mansfield
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-22       Impact factor: 11.205

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