Literature DB >> 15147168

Structural basis of single-stranded RNA recognition.

Ana C Messias1, Michael Sattler.   

Abstract

RNA is an ancient and highly versatile molecule that plays fundamental roles in all living organisms. Its molecular functions range from being a mediator of genetic information to the regulation of essential cellular processes. These functions are often accomplished in close association with RNA binding proteins. Over the past few years, a considerable number of high-resolution three-dimensional structures of important protein-RNA complexes have been determined. Here, we wish to discuss recent examples and highlight principles and distinct features of single-stranded RNA recognition by conserved RNA binding domains.

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Year:  2004        PMID: 15147168     DOI: 10.1021/ar030034m

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  33 in total

Review 1.  RNA sequence- and shape-dependent recognition by proteins in the ribonucleoprotein particle.

Authors:  Richard Stefl; Lenka Skrisovska; Frédéric H-T Allain
Journal:  EMBO Rep       Date:  2005-01       Impact factor: 8.807

2.  Discrimination against RNA Backbones by a ssDNA Binding Protein.

Authors:  Neil R Lloyd; Deborah S Wuttke
Journal:  Structure       Date:  2018-04-19       Impact factor: 5.006

3.  RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates.

Authors:  Christian Schmitz-Linneweber; Rosalind Williams-Carrier; Alice Barkan
Journal:  Plant Cell       Date:  2005-09-02       Impact factor: 11.277

4.  Tying up the Ends: Plasticity in the Recognition of Single-Stranded DNA at Telomeres.

Authors:  Neil R Lloyd; Thayne H Dickey; Robert A Hom; Deborah S Wuttke
Journal:  Biochemistry       Date:  2016-09-15       Impact factor: 3.162

5.  Fragment-based modelling of single stranded RNA bound to RNA recognition motif containing proteins.

Authors:  Isaure Chauvot de Beauchene; Sjoerd J de Vries; Martin Zacharias
Journal:  Nucleic Acids Res       Date:  2016-04-29       Impact factor: 16.971

6.  Nonspecific recognition is achieved in Pot1pC through the use of multiple binding modes.

Authors:  Thayne H Dickey; Marissa A McKercher; Deborah S Wuttke
Journal:  Structure       Date:  2012-11-29       Impact factor: 5.006

7.  C. elegans RNA-binding protein GLD-1 recognizes its multiple targets using sequence, context, and structural information to repress translation.

Authors:  Jung H Doh; Yuchae Jung; Valerie Reinke; Min-Ho Lee
Journal:  Worm       Date:  2013-10-01

8.  Weak binding to the A2RE RNA rigidifies hnRNPA2 RRMs and reduces liquid-liquid phase separation and aggregation.

Authors:  Veronica H Ryan; Scott Watters; Joshua Amaya; Balabhadra Khatiwada; Vincenzo Venditti; Mandar T Naik; Nicolas L Fawzi
Journal:  Nucleic Acids Res       Date:  2020-10-09       Impact factor: 16.971

Review 9.  The sweet side of RNA regulation: glyceraldehyde-3-phosphate dehydrogenase as a noncanonical RNA-binding protein.

Authors:  Michael R White; Elsa D Garcin
Journal:  Wiley Interdiscip Rev RNA       Date:  2015-11-12       Impact factor: 9.957

10.  Crystal structure of Escherichia coli polynucleotide phosphorylase core bound to RNase E, RNA and manganese: implications for catalytic mechanism and RNA degradosome assembly.

Authors:  Salima Nurmohamed; Bhamini Vaidialingam; Anastasia J Callaghan; Ben F Luisi
Journal:  J Mol Biol       Date:  2009-03-24       Impact factor: 5.469

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