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Literature DB >> 15145806

Thermodynamics of enzyme-catalyzed reactions--a database for quantitative biochemistry.

Robert N Goldberg¹, Yadu B Tewari, Talapady N Bhat.

Abstract

UNLABELLED: The Thermodynamics of Enzyme-catalyzed Reactions Database (TECRDB) is a comprehensive collection of thermodynamic data on enzyme-catalyzed reactions. The data, which consist of apparent equilibrium constants and calorimetrically determined molar enthalpies of reaction, are the primary experimental results obtained from thermodynamic studies of biochemical reactions. The results from approximately 1000 published papers containing data on approximately 400 different enzyme-catalyzed reactions constitute the essential information in the database. The information is managed using Oracle and is available on the Web. AVAILABILITY: http://xpdb.nist.gov/enzyme_thermodynamics/

Mesh：

Substances：
Enzymes

Year: 2004 PMID： 15145806 DOI： 10.1093/bioinformatics/bth314

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

55 in total

Review 1. Human cardiac systems electrophysiology and arrhythmogenesis: iteration of experiment and computation.

Authors: Katherine M Holzem; Eli J Madden; Igor R Efimov
Journal: Europace Date: 2014-11 Impact factor: 5.214

2. IGERS: inferring Gibbs energy changes of biochemical reactions from reaction similarities.

Authors: Kristian Rother; Sabrina Hoffmann; Sascha Bulik; Andreas Hoppe; Johann Gasteiger; Herrmann-Georg Holzhütter
Journal: Biophys J Date: 2010-06-02 Impact factor: 4.033

3. Inter-relations between 3-hydroxypropionate and propionate metabolism in rat liver: relevance to disorders of propionyl-CoA metabolism.

Authors: Kirkland A Wilson; Yong Han; Miaoqi Zhang; Jeremy P Hess; Kimberly A Chapman; Gary W Cline; Gregory P Tochtrop; Henri Brunengraber; Guo-Fang Zhang
Journal: Am J Physiol Endocrinol Metab Date: 2017-06-20 Impact factor: 4.310

Thermodynamics of enzyme-catalyzed reactions--a database for quantitative biochemistry.

Review 1. Human cardiac systems electrophysiology and arrhythmogenesis: iteration of experiment and computation.

2. IGERS: inferring Gibbs energy changes of biochemical reactions from reaction similarities.

3. Inter-relations between 3-hydroxypropionate and propionate metabolism in rat liver: relevance to disorders of propionyl-CoA metabolism.

4. The thermodynamic meaning of metabolic exchange fluxes.

Review 5. Designing and encoding models for synthetic biology.

6. Group contribution method for thermodynamic analysis of complex metabolic networks.

7. In silico Geobacter sulfurreducens metabolism and its representation in reactive transport models.

8. Quantitative assessment of thermodynamic constraints on the solution space of genome-scale metabolic models.

9. Thermodynamics-based metabolic flux analysis.

10. The heat released during catalytic turnover enhances the diffusion of an enzyme.