Literature DB >> 15145799

GeneRecords: a relational database for GenBank flat file parsing and data manipulation in personal computers.

P D'Addabbo1, L Lenzi, F Facchin, R Casadei, S Canaider, L Vitale, F Frabetti, P Carinci, M Zannotti, P Strippoli.   

Abstract

UNLABELLED: Extracting the desired data from a database entry for later analysis is a constant need in the biological sequence analysis community; GeneRecords 1.0 is a solution for GenBank biological flat file parsing, as it implements a structured representation of each feature and feature qualifier in GenBank following import in a common database managing system usable in a personal computer (Macintosh and Windows environments). This collection of related databases enables the local management of GenBank records, allowing indexing, retrieval and analysis of both information and sequences on a personal computer. AVAILABILITY: The current release, including the FileMaker Pro runtime application (built for Windows and Macintosh environments), is freely available at http://apollo11.isto.unibo.it/software/

Mesh:

Year:  2004        PMID: 15145799     DOI: 10.1093/bioinformatics/bth321

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  3 in total

1.  Querying the public databases for sequences using complex keywords contained in the feature lines.

Authors:  Olivier Croce; Michaël Lamarre; Richard Christen
Journal:  BMC Bioinformatics       Date:  2006-01-27       Impact factor: 3.169

2.  TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources.

Authors:  Luca Lenzi; Federica Facchin; Francesco Piva; Matteo Giulietti; Maria Chiara Pelleri; Flavia Frabetti; Lorenza Vitale; Raffaella Casadei; Silvia Canaider; Stefania Bortoluzzi; Alessandro Coppe; Gian Antonio Danieli; Giovanni Principato; Sergio Ferrari; Pierluigi Strippoli
Journal:  BMC Genomics       Date:  2011-02-18       Impact factor: 3.969

3.  Identification of minimal eukaryotic introns through GeneBase, a user-friendly tool for parsing the NCBI Gene databank.

Authors:  Allison Piovesan; Maria Caracausi; Marco Ricci; Pierluigi Strippoli; Lorenza Vitale; Maria Chiara Pelleri
Journal:  DNA Res       Date:  2015-11-17       Impact factor: 4.458

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.