Literature DB >> 15145580

Genome information resources - developments at Ensembl.

Martin P Hammond1, Ewan Birney.   

Abstract

Genome information resources such as Ensembl manage and present DNA sequence and annotation arising from genome projects. Recent developments in the Ensembl system include access to inter-species comparisons at both the genomic and protein sequence levels and improvements to the display of polymorphism data. Users can now display their own data in the context of other annotation. In addition, a fast and flexible data retrieval system, EnsMart, has been developed.

Mesh：

Year:  2004        PMID： 15145580     DOI： 10.1016/j.tig.2004.04.002

Source DB:  PubMed          Journal:  Trends Genet        ISSN： 0168-9525            Impact factor:   11.639


  10 in total

1.  Highly conserved proximal promoter element harbouring paired Sox9-binding sites contributes to the tissue- and developmental stage-specific activity of the matrilin-1 gene.

Authors:  Otgonchimeg Rentsendorj; Andrea Nagy; Ildikó Sinkó; Andreea Daraba; Endre Barta; Ibolya Kiss
Journal:  Biochem J       Date:  2005-08-01       Impact factor: 3.857

2.  Quantitative analysis of binding motifs mediating diverse spatial readouts of the Dorsal gradient in the Drosophila embryo.

Authors:  Dmitri Papatsenko; Michael Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-28       Impact factor: 11.205

3.  Expression of the outcome predictor in acute leukemia 1 (OPAL1) gene is not an independent prognostic factor in patients treated according to COALL or St Jude protocols.

Authors:  Amy Holleman; Monique L den Boer; Meyling H Cheok; Karin M Kazemier; Deqing Pei; James R Downing; Gritta E Janka-Schaub; Ulrich Göbel; Ulrike B Graubner; Ching-Hon Pui; William E Evans; Rob Pieters
Journal:  Blood       Date:  2006-05-18       Impact factor: 22.113

4.  A conserved function for a Caenorhabditis elegans Com1/Sae2/CtIP protein homolog in meiotic recombination.

Authors:  Alexandra Penkner; Zsuzsanna Portik-Dobos; Lois Tang; Ralf Schnabel; Maria Novatchkova; Verena Jantsch; Josef Loidl
Journal:  EMBO J       Date:  2007-11-15       Impact factor: 11.598

5.  Speeding disease gene discovery by sequence based candidate prioritization.

Authors:  Euan A Adie; Richard R Adams; Kathryn L Evans; David J Porteous; Ben S Pickard
Journal:  BMC Bioinformatics       Date:  2005-03-14       Impact factor: 3.169

6.  Heterotachy in mammalian promoter evolution.

Authors:  Martin S Taylor; Chikatoshi Kai; Jun Kawai; Piero Carninci; Yoshihide Hayashizaki; Colin A M Semple
Journal:  PLoS Genet       Date:  2006-04-28       Impact factor: 5.917

7.  Anopheles gambiae immune responses to human and rodent Plasmodium parasite species.

Authors:  Yuemei Dong; Ruth Aguilar; Zhiyong Xi; Emma Warr; Emmanuel Mongin; George Dimopoulos
Journal:  PLoS Pathog       Date:  2006-06-09       Impact factor: 6.823

8.  DoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream sequences from chordates and plants.

Authors:  Endre Barta; Endre Sebestyén; Tamás B Pálfy; Gábor Tóth; Csaba P Ortutay; László Patthy
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

9.  Tag SNP selection for prediction of tick resistance in Brazilian Braford and Hereford cattle breeds using Bayesian methods.

Authors:  Bruna P Sollero; Vinícius S Junqueira; Cláudia C G Gomes; Alexandre R Caetano; Fernando F Cardoso
Journal:  Genet Sel Evol       Date:  2017-06-15       Impact factor: 4.297

10.  CompMoby: comparative MobyDick for detection of cis-regulatory motifs.

Authors:  Christina Chaivorapol; Collin Melton; Grace Wei; Ru-Fang Yeh; Miguel Ramalho-Santos; Robert Blelloch; Hao Li
Journal:  BMC Bioinformatics       Date:  2008-10-27       Impact factor: 3.169
  10 in total

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