Literature DB >> 15145066

Conserved patterns in the evolution of Tribolium satellite DNAs.

Brankica Mravinac1, Miroslav Plohl, Durdica Ugarković.   

Abstract

Two satellite DNAs, TANAPH and TDEST, isolated from the beetle species Tribolium anaphe and Tribolium destructor, respectively, are characterized and compared with previously described Tribolium satellites, in order to deduce possible constraints on satellite sequence evolution between closely related species. Sequence diversity analysis of cloned monomers reveals the presence of variable and conserved segments in both satellites. In addition, non-random organization of As or Ts and their periodical distribution in the form of A or T >/=3 tracts, as well as CENP-B box-like motifs and dyad structures have been found in both satellites. Similar structural features are also present in satellites from other Tribolium species. We therefore propose that they, together with the observed non-constant rate of evolution along the satellite sequence, could be related to putative protein binding sites and suggest a possible selective pressure affecting these sequences. Tribolium satellites, including TANAPH and TDEST, are located in the pericentromeric heterochromatin of all chromosomes of the corresponding species. Since satellites from different species exhibit no significant sequence homology, we propose that they did not originate from a common ancestral sequence. More probably, they derive from simple sequence modules some of which could represent protein binding sites. Shuffling of simple sequence modules could generate different satellites, able to perform a similar role in different species.

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Year:  2004        PMID: 15145066     DOI: 10.1016/j.gene.2004.02.055

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  16 in total

1.  Structure and population dynamics of the major satellite DNA in the red flour beetle Tribolium castaneum.

Authors:  Isidoro Feliciello; Gianni Chinali; Durđica Ugarković
Journal:  Genetica       Date:  2011-08-12       Impact factor: 1.082

2.  Preservation and high sequence conservation of satellite DNAs suggest functional constraints.

Authors:  Brankica Mravinac; Miroslav Plohl; Durdica Ugarković
Journal:  J Mol Evol       Date:  2005-09-12       Impact factor: 2.395

Review 3.  Functional elements residing within satellite DNAs.

Authors:  Durdica Ugarkovic
Journal:  EMBO Rep       Date:  2005-11       Impact factor: 8.807

4.  The Evolution of satellite III DNA subfamilies among primates.

Authors:  Malgorzata Jarmuz; Caron D Glotzbach; Kristen A Bailey; Ruma Bandyopadhyay; Lisa G Shaffer
Journal:  Am J Hum Genet       Date:  2007-01-23       Impact factor: 11.025

5.  Differential spreading of HinfI satellite DNA variants during radiation in Centaureinae.

Authors:  María Ester Quesada del Bosque; Inmaculada López-Flores; Víctor N Suárez-Santiago; Manuel A Garrido-Ramos
Journal:  Ann Bot       Date:  2013-10-29       Impact factor: 4.357

6.  W-enriched satellite sequence in the Indian meal moth, Plodia interpunctella (Lepidoptera, Pyralidae).

Authors:  Martina Dalíková; Magda Zrzavá; Svatava Kubíčková; František Marec
Journal:  Chromosome Res       Date:  2017-05-12       Impact factor: 5.239

7.  Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species.

Authors:  Hye-Ran Lee; Wenli Zhang; Tim Langdon; Weiwei Jin; Huihuang Yan; Zhukuan Cheng; Jiming Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-22       Impact factor: 11.205

8.  Long inversely oriented subunits form a complex monomer of Tribolium brevicornis satellite DNA.

Authors:  Brankica Mravinac; Ethurthica Ugarković; Damjan Franjević; Miroslav Plohl
Journal:  J Mol Evol       Date:  2005-04       Impact factor: 2.395

9.  CpSAT-1, a transcribed satellite sequence from the codling moth, Cydia pomonella.

Authors:  Pavlína Věchtová; Martina Dalíková; Miroslava Sýkorová; Martina Žurovcová; Zoltán Füssy; Magda Zrzavá
Journal:  Genetica       Date:  2016-05-28       Impact factor: 1.082

10.  Divergence in centromere structure distinguishes related genomes in Coix lacryma-jobi and its wild relative.

Authors:  Yonghua Han; Guixiang Wang; Zhao Liu; Jinhua Liu; Wei Yue; Rentao Song; Xueyong Zhang; Weiwei Jin
Journal:  Chromosoma       Date:  2009-09-08       Impact factor: 4.316

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