Literature DB >> 15135065

Evidence that human genes of modular proteins have retained significantly more ancestral introns than their fly or worm orthologues.

László Bányai1, László Patthy.   

Abstract

Comparison of the exon-intron structures of human, fly and worm orthologues of mosaic genes assembled from class 1-1 modules by exon-shuffling has revealed that human genes retained significantly more of the original inter-module introns than their protostome orthologues. It is suggested that the much higher rate of intron loss in the worm- and insect lineages than in the chordate lineage reflects their greater tendency for genome compaction.

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Year:  2004        PMID: 15135065     DOI: 10.1016/j.febslet.2004.03.088

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  12 in total

1.  Complex early genes.

Authors:  Scott W Roy; Walter Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-01       Impact factor: 11.205

2.  Rates of intron loss and gain: implications for early eukaryotic evolution.

Authors:  Scott William Roy; Walter Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-12       Impact factor: 11.205

3.  The pattern of intron loss.

Authors:  Scott W Roy; Walter Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-10       Impact factor: 11.205

4.  Very little intron loss/gain in Plasmodium: intron loss/gain mutation rates and intron number.

Authors:  Scott William Roy; Daniel L Hartl
Journal:  Genome Res       Date:  2006-05-15       Impact factor: 9.043

5.  The excess of 5' introns in eukaryotic genomes.

Authors:  Kui Lin; Da-Yong Zhang
Journal:  Nucleic Acids Res       Date:  2005-11-27       Impact factor: 16.971

6.  Significant expansion of exon-bordering protein domains during animal proteome evolution.

Authors:  Mingyi Liu; Heiko Walch; Shaoping Wu; Andrei Grigoriev
Journal:  Nucleic Acids Res       Date:  2005-01-07       Impact factor: 16.971

7.  Exon definition as a potential negative force against intron losses in evolution.

Authors:  Deng-Ke Niu
Journal:  Biol Direct       Date:  2008-11-13       Impact factor: 4.540

8.  Phylogenetic analysis, structural evolution and functional divergence of the 12-oxo-phytodienoate acid reductase gene family in plants.

Authors:  Wenyan Li; Bing Liu; Lujun Yu; Dongru Feng; Hongbin Wang; Jinfa Wang
Journal:  BMC Evol Biol       Date:  2009-05-05       Impact factor: 3.260

9.  Identification and correction of abnormal, incomplete and mispredicted proteins in public databases.

Authors:  Alinda Nagy; Hédi Hegyi; Krisztina Farkas; Hedvig Tordai; Evelin Kozma; László Bányai; László Patthy
Journal:  BMC Bioinformatics       Date:  2008-08-27       Impact factor: 3.169

10.  Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing.

Authors:  Manuel Irimia; Jakob Lewin Rukov; David Penny; Scott William Roy
Journal:  BMC Evol Biol       Date:  2007-10-04       Impact factor: 3.260

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