Literature DB >> 15134448

Oxygen activation by the noncoupled binuclear copper site in peptidylglycine alpha-hydroxylating monooxygenase. Spectroscopic definition of the resting sites and the putative CuIIM-OOH intermediate.

Peng Chen1, Joseph Bell, Betty A Eipper, Edward I Solomon.   

Abstract

Spectroscopic methods, density functional calculations, and ligand field analyses are combined to define the geometric models and electronic structure descriptions of the Cu(M) and Cu(H) sites in the oxidized form of the noncoupled binuclear copper protein peptidylglycine alpha-hydroxylating monooxygenase (PHM). The Cu(M) site has a square pyramidal geometry with a long axial Cu-methionine bond and two histidines, H(2)O, and OH(-) as equatorial ligands. The Cu(H) site has a slightly D(2)(d) distorted square planar geometry with three histidines and H(2)O ligands. The structurally inequivalent Cu(M) and Cu(H) sites do not exhibit measurable differences in optical and electron paramagnetic resonance (EPR) spectra, which result from their similar ligand field transition energies and ground-state Cu covalencies. The additional axial methionine ligand interaction and associated square pyramidal distortion of the Cu(M) site have the opposite effect of the strong equatorial OH(-) donor ligand on the Cu d orbital splitting pattern relative to the Cu(H) site leading to similar ligand field transition energies for both sites. The small molecule NO(2)(-) binds in different coordination modes to the Cu(M) and Cu(H) site because of differences in their exchangeable coordination positions resulting in these Cu(II) sites being spectroscopically distinguishable. Azide binding to PHM is used as a spectroscopic and electronic structure analogue to OOH(-) binding to provide a starting point for developing a geometric and electronic structural model for the putative Cu(II)(M)-OOH intermediate in the H-atom abstraction reaction of PHM. Possible electronic structure contributions of the Cu(II)(M)-OOH intermediate to reactivity are considered by correlation to the well-studied L3Cu(II)-OOH model complex (L3 = [HB[3-tBu-5-iPrpz](3)]). The Met-S ligand of the Cu(M) site is found to contribute to the stabilization of the Cu(II)(M)-oxyl species, which would be a product of Cu(II)(M)-OOH H-atom abstraction reaction. This Met-S contribution could have a significant effect on the energetics of a H-atom abstraction reaction by the Cu(II)(M)-OOH intermediate.

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Year:  2004        PMID: 15134448     DOI: 10.1021/bi0362830

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  41 in total

1.  Sulfur donor atom effects on copper(I)/O(2) chemistry with thioanisole containing tetradentate N(3)S ligand leading to μ-1,2-peroxo-dicopper(II) species.

Authors:  Yunho Lee; Dong-Heon Lee; Ga Young Park; Heather R Lucas; Amy A Narducci Sarjeant; Matthew T Kieber-Emmons; Michael A Vance; Ashley E Milligan; Edward I Solomon; Kenneth D Karlin
Journal:  Inorg Chem       Date:  2010-10-04       Impact factor: 5.165

Review 2.  Peptidylgycine α-amidating monooxygenase and copper: a gene-nutrient interaction critical to nervous system function.

Authors:  Danielle Bousquet-Moore; Richard E Mains; Betty A Eipper
Journal:  J Neurosci Res       Date:  2010-09       Impact factor: 4.164

3.  Imino-oxy acetic acid dealkylation as evidence for an inner-sphere alcohol intermediate in the reaction catalyzed by peptidylglycine alpha-hydroxylating monooxygenase.

Authors:  Neil R McIntyre; Edward W Lowe; David J Merkler
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

4.  Models of noncoupled dinuclear copper centers in azurin.

Authors:  Steven M Berry; Jonathan R Mayers; Nicholas A Zehm
Journal:  J Biol Inorg Chem       Date:  2008-10-02       Impact factor: 3.358

5.  Nitrite Reductase Activity in Engineered Azurin Variants.

Authors:  Steven M Berry; Jacob N Strange; Erika L Bladholm; Balabhadra Khatiwada; Christine G Hedstrom; Alexandra M Sauer
Journal:  Inorg Chem       Date:  2016-04-07       Impact factor: 5.165

6.  The catalytic copper of peptidylglycine alpha-hydroxylating monooxygenase also plays a critical structural role.

Authors:  Xavier Siebert; Betty A Eipper; Richard E Mains; Sean T Prigge; Ninian J Blackburn; L Mario Amzel
Journal:  Biophys J       Date:  2005-08-12       Impact factor: 4.033

7.  O2 and N2O activation by Bi-, Tri-, and tetranuclear Cu clusters in biology.

Authors:  Edward I Solomon; Ritimukta Sarangi; Julia S Woertink; Anthony J Augustine; Jungjoo Yoon; Somdatta Ghosh
Journal:  Acc Chem Res       Date:  2007-05-02       Impact factor: 22.384

8.  High-resolution structure of a lytic polysaccharide monooxygenase from Hypocrea jecorina reveals a predicted linker as an integral part of the catalytic domain.

Authors:  Henrik Hansson; Saeid Karkehabadi; Nils Mikkelsen; Nicholai R Douglas; Steve Kim; Anna Lam; Thijs Kaper; Brad Kelemen; Katlyn K Meier; Stephen M Jones; Edward I Solomon; Mats Sandgren
Journal:  J Biol Chem       Date:  2017-09-12       Impact factor: 5.157

9.  HHM motif at the CuH-site of peptidylglycine monooxygenase is a pH-dependent conformational switch.

Authors:  Chelsey D Kline; Mary Mayfield; Ninian J Blackburn
Journal:  Biochemistry       Date:  2013-04-05       Impact factor: 3.162

10.  Coordination of peroxide to the Cu(M) center of peptidylglycine α-hydroxylating monooxygenase (PHM): structural and computational study.

Authors:  Katarzyna Rudzka; Diego M Moreno; Betty Eipper; Richard Mains; Dario A Estrin; L Mario Amzel
Journal:  J Biol Inorg Chem       Date:  2012-12-18       Impact factor: 3.358

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