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Literature DB >> 15131651

Applied bioinformatics for the identification of regulatory elements.

Wyeth W Wasserman¹, Albin Sandelin.

Abstract

Mesh：

Year: 2004 PMID： 15131651 DOI： 10.1038/nrg1315

Source DB: PubMed Journal: Nat Rev Genet ISSN： 1471-0056 Impact factor: 53.242

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477 in total

1. Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factor.

Authors: Edwige Moyroud; Eugenio Gómez Minguet; Felix Ott; Levi Yant; David Posé; Marie Monniaux; Sandrine Blanchet; Olivier Bastien; Emmanuel Thévenon; Detlef Weigel; Markus Schmid; François Parcy
Journal: Plant Cell Date: 2011-04-22 Impact factor: 11.277

2. Construction of regulatory networks using expression time-series data of a genotyped population.

Authors: Ka Yee Yeung; Kenneth M Dombek; Kenneth Lo; John E Mittler; Jun Zhu; Eric E Schadt; Roger E Bumgarner; Adrian E Raftery
Journal: Proc Natl Acad Sci U S A Date: 2011-11-14 Impact factor: 11.205

3. Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs.

Authors: Morgane Thomas-Chollier; Andrew Hufton; Matthias Heinig; Sean O'Keeffe; Nassim El Masri; Helge G Roider; Thomas Manke; Martin Vingron
Journal: Nat Protoc Date: 2011-11-03 Impact factor: 13.491

4. Global expression analysis identified a preferentially nerve growth factor-induced transcriptional program regulated by sustained mitogen-activated protein kinase/extracellular signal-regulated kinase (ERK) and AP-1 protein activation during PC12 cell differentiation.

Authors: Steven Mullenbrock; Janki Shah; Geoffrey M Cooper
Journal: J Biol Chem Date: 2011-11-07 Impact factor: 5.157

Review 5. Metazoan promoters: emerging characteristics and insights into transcriptional regulation.

Authors: Boris Lenhard; Albin Sandelin; Piero Carninci
Journal: Nat Rev Genet Date: 2012-03-06 Impact factor: 53.242

6. A regulatory toolbox of MiniPromoters to drive selective expression in the brain.

Authors: Elodie Portales-Casamar; Douglas J Swanson; Li Liu; Charles N de Leeuw; Kathleen G Banks; Shannan J Ho Sui; Debra L Fulton; Johar Ali; Mahsa Amirabbasi; David J Arenillas; Nazar Babyak; Sonia F Black; Russell J Bonaguro; Erich Brauer; Tara R Candido; Mauro Castellarin; Jing Chen; Ying Chen; Jason C Y Cheng; Vik Chopra; T Roderick Docking; Lisa Dreolini; Cletus A D'Souza; Erin K Flynn; Randy Glenn; Kristi Hatakka; Taryn G Hearty; Behzad Imanian; Steven Jiang; Shadi Khorasan-zadeh; Ivana Komljenovic; Stéphanie Laprise; Nancy Y Liao; Jonathan S Lim; Stuart Lithwick; Flora Liu; Jun Liu; Meifen Lu; Melissa McConechy; Andrea J McLeod; Marko Milisavljevic; Jacek Mis; Katie O'Connor; Betty Palma; Diana L Palmquist; Jean-François Schmouth; Magdalena I Swanson; Bonny Tam; Amy Ticoll; Jenna L Turner; Richard Varhol; Jenny Vermeulen; Russell F Watkins; Gary Wilson; Bibiana K Y Wong; Siaw H Wong; Tony Y T Wong; George S Yang; Athena R Ypsilanti; Steven J M Jones; Robert A Holt; Daniel Goldowitz; Wyeth W Wasserman; Elizabeth M Simpson
Journal: Proc Natl Acad Sci U S A Date: 2010-08-31 Impact factor: 11.205

7. Accurate prediction of gene expression by integration of DNA sequence statistics with detailed modeling of transcription regulation.

Authors: Jose M G Vilar
Journal: Biophys J Date: 2010-10-20 Impact factor: 4.033