Literature DB >> 15130931

ASIAN: a website for network inference.

Sachiyo Aburatani1, Kousuke Goto, Shigeru Saito, Masaki Fumoto, Akira Imaizumi, Nobuyoshi Sugaya, Hiroo Murakami, Makihiko Sato, Hiroyuki Toh, Katsuhisa Horimoto.   

Abstract

UNLABELLED: We constructed a website for inferring a network by applying the graphical Gaussian model, from a large amount of data, including redundant information. The available tools on the website are based on a system, named ASIAN (Automatic System for Inferring A Network), in combination with the two methods in our previous papers, which were designed to analyze gene expression profiles on a genomic scale. One of the remarkable features of the website is its ability to infer a network, concomitant with hierarchical clustering and the following estimation of cluster boundaries. AVAILABILITY: http://eureka.ims.u-tokyo.ac.jp/asian

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Year:  2004        PMID: 15130931     DOI: 10.1093/bioinformatics/bth296

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  4 in total

1.  Gene systems network inferred from expression profiles in hepatocellular carcinogenesis by graphical Gaussian model.

Authors:  Sachiyo Aburatani; Fuyan Sun; Shigeru Saito; Masao Honda; Shu-ichi Kaneko; Katsuhisa Horimoto
Journal:  EURASIP J Bioinform Syst Biol       Date:  2007

2.  Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks.

Authors:  Benjamin Haibe-Kains; Catharina Olsen; Amira Djebbari; Gianluca Bontempi; Mick Correll; Christopher Bouton; John Quackenbush
Journal:  Nucleic Acids Res       Date:  2011-11-16       Impact factor: 16.971

3.  GENIES: gene network inference engine based on supervised analysis.

Authors:  Masaaki Kotera; Yoshihiro Yamanishi; Yuki Moriya; Minoru Kanehisa; Susumu Goto
Journal:  Nucleic Acids Res       Date:  2012-05-18       Impact factor: 16.971

4.  ASIAN: a web server for inferring a regulatory network framework from gene expression profiles.

Authors:  Sachiyo Aburatani; Kousuke Goto; Shigeru Saito; Hiroyuki Toh; Katsuhisa Horimoto
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

  4 in total

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