Literature DB >> 15130927

Heterogeneity detector: finding heterogeneous positions in Phred/Phrap assemblies.

W H Lee1, V B Vega.   

Abstract

UNLABELLED: A modification to Phred and program to detect heterogeneous positions, which is particularly useful in the identification of mutations and other abnormalities in Phred/Phrap genome assemblies. AVAILABILITY: The package is made available at http://glscompute.gis.a-star.edu.sg/~charlie/DHetero.html

Mesh：

Year:  2004        PMID： 15130927     DOI： 10.1093/bioinformatics/bth301

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  10 in total

1.  Complete genome sequence of a novel porcine enterovirus strain in China.

Authors:  Wen Zhang; Shixing Yang; Quan Shen; Liping Ren; Tongling Shan; Jianzhong Wei; Li Cui; Xiuguo Hua
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2.  Complete genome sequence of the genotype 4 hepatitis E virus strain prevalent in swine in Jiangsu Province, China, reveals a close relationship with that from the human population in this area.

Authors:  Hua Wang; Yilin He; Quan Shen; Xiaochun Wang; Shixing Yang; Li Cui; Liping Ren; Guangming Sun; Xiuguo Hua; Shihe Shao; Wen Zhang
Journal:  J Virol       Date:  2012-08       Impact factor: 5.103

3.  PineSAP--sequence alignment and SNP identification pipeline.

Authors:  Jill L Wegrzyn; Jennifer M Lee; John Liechty; David B Neale
Journal:  Bioinformatics       Date:  2009-08-10       Impact factor: 6.937

4.  JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Authors:  Mariano Latorre; Herman Silva; Juan Saba; Carito Guziolowski; Paula Vizoso; Veronica Martinez; Jonathan Maldonado; Andrea Morales; Rodrigo Caroca; Veronica Cambiazo; Reinaldo Campos-Vargas; Mauricio Gonzalez; Ariel Orellana; Julio Retamales; Lee A Meisel
Journal:  BMC Bioinformatics       Date:  2006-11-23       Impact factor: 3.169

5.  Genomic analysis of six new Geobacillus strains reveals highly conserved carbohydrate degradation architectures and strategies.

Authors:  Phillip J Brumm; Pieter De Maayer; David A Mead; Don A Cowan
Journal:  Front Microbiol       Date:  2015-05-12       Impact factor: 5.640

6.  An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines.

Authors:  Michael DeGiorgio; John Syring; Andrew J Eckert; Aaron Liston; Richard Cronn; David B Neale; Noah A Rosenberg
Journal:  BMC Evol Biol       Date:  2014-03-29       Impact factor: 3.260

7.  Genomic and enzymatic results show Bacillus cellulosilyticus uses a novel set of LPXTA carbohydrases to hydrolyze polysaccharides.

Authors:  David Mead; Colleen Drinkwater; Phillip J Brumm
Journal:  PLoS One       Date:  2013-04-04       Impact factor: 3.240

8.  SAT, a flexible and optimized Web application for SSR marker development.

Authors:  Alexis Dereeper; Xavier Argout; Claire Billot; Jean-François Rami; Manuel Ruiz
Journal:  BMC Bioinformatics       Date:  2007-11-29       Impact factor: 3.169

9.  Genetic analysis and molecular characterization of Chinese sesame (Sesamum indicum L.) cultivars using insertion-deletion (InDel) and simple sequence repeat (SSR) markers.

Authors:  Kun Wu; Minmin Yang; Hongyan Liu; Ye Tao; Ju Mei; Yingzhong Zhao
Journal:  BMC Genet       Date:  2014-03-19       Impact factor: 2.797

10.  Complete chloroplast genome of green tide algae Ulva flexuosa (Ulvophyceae, Chlorophyta) with comparative analysis.

Authors:  Chuner Cai; Lingke Wang; Lingjie Zhou; Peimin He; Binghua Jiao
Journal:  PLoS One       Date:  2017-09-01       Impact factor: 3.240
  10 in total

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