Literature DB >> 15130926

LUCY2: an interactive DNA sequence quality trimming and vector removal tool.

Song Li1, Hui-Hsien Chou.   

Abstract

UNLABELLED: Lucy2 is a raw DNA sequence trimming and visualization tool based on the popular command-line Lucy1. Users can change parameters, trim multiple sequences and visualize the results within an integrated, easy-to-use graphical user interface. Lucy2 is designed specifically for non-programmers to use, and is currently available on Windows, Linux and MacOS X. Source code is also available for porting to the other platforms. AVAILABILITY: Lucy2 is distributed under the GNU General Public License and can be downloaded from www.complex.iastate.edu

Mesh：

Year:  2004        PMID： 15130926     DOI： 10.1093/bioinformatics/bth302

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  45 in total

1.  Leveraging the rice genome sequence for monocot comparative and translational genomics.

Authors:  H C Lohithaswa; F A Feltus; H P Singh; C D Bacon; C D Bailey; A H Paterson
Journal:  Theor Appl Genet       Date:  2007-05-24       Impact factor: 5.699

2.  Antibiotics, Antibiotic Resistance Genes, and Bacterial Community Composition in Fresh Water Aquaculture Environment in China.

Authors:  Wenguang Xiong; Yongxue Sun; Tong Zhang; Xueyao Ding; Yafei Li; Mianzhi Wang; Zhenling Zeng
Journal:  Microb Ecol       Date:  2015-03-10       Impact factor: 4.552

3.  Construction of the BAC Library of Small Abalone (Haliotis diversicolor) for Gene Screening and Genome Characterization.

Authors:  Likun Jiang; Weiwei You; Xiaojun Zhang; Jian Xu; Yanliang Jiang; Kai Wang; Zixia Zhao; Baohua Chen; Yunfeng Zhao; Shahid Mahboob; Khalid A Al-Ghanim; Caihuan Ke; Peng Xu
Journal:  Mar Biotechnol (NY)       Date:  2015-10-05       Impact factor: 3.619

4.  Transcriptome profiling and molecular marker discovery in red pepper, Capsicum annuum L. TF68.

Authors:  Fu-Hao Lu; Myeong-Cheoul Cho; Yong-Jin Park
Journal:  Mol Biol Rep       Date:  2011-06-25       Impact factor: 2.316

5.  SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read.

Authors:  Juan Falgueras; Antonio J Lara; Noé Fernández-Pozo; Francisco R Cantón; Guillermo Pérez-Trabado; M Gonzalo Claros
Journal:  BMC Bioinformatics       Date:  2010-01-20       Impact factor: 3.169

6.  Sequencing, analysis, and annotation of expressed sequence tags for Camelus dromedarius.

Authors:  Abdulaziz M Al-Swailem; Maher M Shehata; Faisel M Abu-Duhier; Essam J Al-Yamani; Khalid A Al-Busadah; Mohammed S Al-Arawi; Ali Y Al-Khider; Abdullah N Al-Muhaimeed; Fahad H Al-Qahtani; Manee M Manee; Badr M Al-Shomrani; Saad M Al-Qhtani; Amer S Al-Harthi; Kadir C Akdemir; Mehmet S Inan; Hasan H Otu
Journal:  PLoS One       Date:  2010-05-19       Impact factor: 3.240

7.  Characterization and tissue expression of channel catfish (Ictalurus punctatus Rafinesque, 1818) ubiquitin carboxyl-terminal hydrolase L5 (UCHL5) cDNA.

Authors:  Hung-Yueh Yeh; Phillip H Klesius
Journal:  Mol Biol Rep       Date:  2009-03-06       Impact factor: 2.316

8.  PAVE: program for assembling and viewing ESTs.

Authors:  Carol Soderlund; Eric Johnson; Matthew Bomhoff; Anne Descour
Journal:  BMC Genomics       Date:  2009-08-26       Impact factor: 3.969

9.  HaMStR: profile hidden markov model based search for orthologs in ESTs.

Authors:  Ingo Ebersberger; Sascha Strauss; Arndt von Haeseler
Journal:  BMC Evol Biol       Date:  2009-07-08       Impact factor: 3.260

10.  Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.

Authors:  Carol Soderlund; Anne Descour; Dave Kudrna; Matthew Bomhoff; Lomax Boyd; Jennifer Currie; Angelina Angelova; Kristi Collura; Marina Wissotski; Elizabeth Ashley; Darren Morrow; John Fernandes; Virginia Walbot; Yeisoo Yu
Journal:  PLoS Genet       Date:  2009-11-20       Impact factor: 5.917
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