Literature DB >> 15130843

Spectronet: a package for computing spectra and median networks.

Katharina T Huber1, Michael Langton, David Penny, Vincent Moulton, Michael Hendy.   

Abstract

Spectronet is a package that uses various methods for exploring and visualising complex evolutionary signals. Given an alignment in NEXUS format, the package works by computing a collection of weighted splits or bipartitions of the taxa and then allows the user to interactively analyse the resulting collection using tools such as Lento-plots and median networks. The package is highly interactive and available for PCs.

Mesh:

Year:  2002        PMID: 15130843

Source DB:  PubMed          Journal:  Appl Bioinformatics        ISSN: 1175-5636


  13 in total

1.  Parallel signatures of sequence evolution among hearing genes in echolocating mammals: an emerging model of genetic convergence.

Authors:  K T J Davies; J A Cotton; J D Kirwan; E C Teeling; S J Rossiter
Journal:  Heredity (Edinb)       Date:  2011-12-14       Impact factor: 3.821

2.  Quartet-net: a quartet-based method to reconstruct phylogenetic networks.

Authors:  Jialiang Yang; Stefan Grünewald; Xiu-Feng Wan
Journal:  Mol Biol Evol       Date:  2013-03-14       Impact factor: 16.240

3.  Deciphering past human population movements in Oceania: provably optimal trees of 127 mtDNA genomes.

Authors:  Melanie J Pierson; Rosa Martinez-Arias; Barbara R Holland; Neil J Gemmell; Matthew E Hurles; David Penny
Journal:  Mol Biol Evol       Date:  2006-07-19       Impact factor: 16.240

4.  Integrative and sequence characteristics of a novel genetic element, ICE6013, in Staphylococcus aureus.

Authors:  Davida S Smyth; D Ashley Robinson
Journal:  J Bacteriol       Date:  2009-07-31       Impact factor: 3.490

5.  The hearing gene Prestin reunites echolocating bats.

Authors:  Gang Li; Jinhong Wang; Stephen J Rossiter; Gareth Jones; James A Cotton; Shuyi Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-05       Impact factor: 11.205

6.  Biosystematics and conservation: a case study with two enigmatic and uncommon species of Crassula from New Zealand.

Authors:  P J De Lange; P B Heenan; D J Keeling; B G Murray; R Smissen; W R Sykes
Journal:  Ann Bot       Date:  2007-11-30       Impact factor: 4.357

7.  phangorn: phylogenetic analysis in R.

Authors:  Klaus Peter Schliep
Journal:  Bioinformatics       Date:  2010-12-17       Impact factor: 6.937

8.  Darwin's Theory of Descent with Modification, versus the Biblical Tree of Life.

Authors:  David Penny
Journal:  PLoS Biol       Date:  2011-07-05       Impact factor: 8.029

9.  A nuclear ribosomal DNA phylogeny of acer inferred with maximum likelihood, splits graphs, and motif analysis of 606 sequences.

Authors:  Guido W Grimm; Susanne S Renner; Alexandros Stamatakis; Vera Hemleben
Journal:  Evol Bioinform Online       Date:  2007-02-17       Impact factor: 1.625

10.  Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects.

Authors:  Johann Wolfgang Wägele; Christoph Mayer
Journal:  BMC Evol Biol       Date:  2007-08-28       Impact factor: 3.260

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