Literature DB >> 15130803

MICAS: a fully automated web server for microsatellite extraction and analysis from prokaryote and viral genomic sequences.

Vattipally B Sreenu1, Gundu Ranjitkumar, Sugavanam Swaminathan, Sasidharan Priya, Buddhaditta Bose, Mogili N Pavan, Geeta Thanu, Javaregowda Nagaraju, Hampapathalu A Nagarajaram.   

Abstract

MICAS is a web server for extracting microsatellite information from completely sequenced prokaryote and viral genomes, or user-submitted sequences. This server provides an integrated platform for MICdb (database of prokaryote and viral microsatellites), W-SSRF (simple sequence repeat finding program) and Autoprimer (primer design software). MICAS, through dynamic HTML page generation, helps in the systematic extraction of microsatellite information from selected genomes hosted on MICdb or from user-submitted sequences. Further, it assists in the design of primers with the help of Autoprimer, for sequences containing selected microsatellite tracts.

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Year:  2003        PMID： 15130803

Source DB:  PubMed          Journal:  Appl Bioinformatics        ISSN： 1175-5636


  8 in total

1.  A study on mutational dynamics of simple sequence repeats in relation to mismatch repair system in prokaryotic genomes.

Authors:  Pankaj Kumar; H A Nagarajaram
Journal:  J Mol Evol       Date:  2012-03-14       Impact factor: 2.395

2.  Simple sequence repeats and genome plasticity in Streptococcus agalactiae.

Authors:  Robert Janulczyk; Vega Masignani; Domenico Maione; Hervé Tettelin; Guido Grandi; John L Telford
Journal:  J Bacteriol       Date:  2010-05-21       Impact factor: 3.490

3.  PSSRdb: a relational database of polymorphic simple sequence repeats extracted from prokaryotic genomes.

Authors:  Pankaj Kumar; Pasumarthy S Chaitanya; Hampapathalu A Nagarajaram
Journal:  Nucleic Acids Res       Date:  2010-11-25       Impact factor: 16.971

4.  Microsatellite polymorphism across the M. tuberculosis and M. bovis genomes: implications on genome evolution and plasticity.

Authors:  Vattipally B Sreenu; Pankaj Kumar; Javaregowda Nagaraju; Hampapathalu A Nagarajaram
Journal:  BMC Genomics       Date:  2006-04-10       Impact factor: 3.969

5.  SilkSatDb: a microsatellite database of the silkworm, Bombyx mori.

Authors:  M D Prasad; M Muthulakshmi; K P Arunkumar; M Madhu; V B Sreenu; V Pavithra; B Bose; H A Nagarajaram; K Mita; T Shimada; J Nagaraju
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

Review 6.  Genomic and global approaches to unravelling how hypermutable sequences influence bacterial pathogenesis.

Authors:  Fadil A Bidmos; Christopher D Bayliss
Journal:  Pathogens       Date:  2014-02-25

Review 7.  A comprehensive view of the web-resources related to sericulture.

Authors:  Deepika Singh; Hasnahana Chetia; Debajyoti Kabiraj; Swagata Sharma; Anil Kumar; Pragya Sharma; Manab Deka; Utpal Bora
Journal:  Database (Oxford)       Date:  2016-06-15       Impact factor: 3.451

8.  MICdb3.0: a comprehensive resource of microsatellite repeats from prokaryotic genomes.

Authors:  Suresh B Mudunuri; Sujan Patnana; Hampapathalu A Nagarajaram
Journal:  Database (Oxford)       Date:  2014-02-17       Impact factor: 3.451
  8 in total

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