Literature DB >> 15127892

Modeling operon dynamics: the tryptophan and lactose operons as paradigms.

Michael C Mackey1, Moisés Santillán, Necmettin Yildirim.   

Abstract

Understanding the regulation of gene control networks and their ensuing dynamics will be a critical component in the understanding of the mountain of genomic data being currently collected. This paper reviews recent mathematical modeling work on the tryptophan and lactose operons which are, respectively, the classical paradigms for repressible and inducible operons.

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Year:  2004        PMID: 15127892     DOI: 10.1016/j.crvi.2003.11.009

Source DB:  PubMed          Journal:  C R Biol        ISSN: 1631-0691            Impact factor:   1.583


  9 in total

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Authors:  Luis Mier-Y-Teran-Romero; Eric Forgoston; Ira B Schwartz
Journal:  Rep U S       Date:  2011

2.  Topology and static response of interaction networks in molecular biology.

Authors:  Ovidiu Radulescu; Sandrine Lagarrigue; Anne Siegel; Philippe Veber; Michel Le Borgne
Journal:  J R Soc Interface       Date:  2006-02-22       Impact factor: 4.118

3.  Control of Streptococcus pyogenes virulence: modeling of the CovR/S signal transduction system.

Authors:  Alexander Y Mitrophanov; Gordon Churchward; Mark Borodovsky
Journal:  J Theor Biol       Date:  2006-11-21       Impact factor: 2.691

4.  Mechanistically consistent reduced models of synthetic gene networks.

Authors:  Luis Mier-y-Terán-Romero; Mary Silber; Vassily Hatzimanikatis
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

Review 5.  Mathematical modeling of gene expression: a guide for the perplexed biologist.

Authors:  Ahmet Ay; David N Arnosti
Journal:  Crit Rev Biochem Mol Biol       Date:  2011-04       Impact factor: 8.250

6.  Coherent Pattern Prediction in Swarms of Delay-Coupled Agents.

Authors:  Luis Mier-Y-Teran-Romero; Eric Forgoston; Ira B Schwartz
Journal:  IEEE Trans Robot       Date:  2012-10       Impact factor: 5.567

7.  The origins of time-delay in template biopolymerization processes.

Authors:  Luis Mier-y-Terán-Romero; Mary Silber; Vassily Hatzimanikatis
Journal:  PLoS Comput Biol       Date:  2010-04-01       Impact factor: 4.475

Review 8.  Tryptophan Biochemistry: Structural, Nutritional, Metabolic, and Medical Aspects in Humans.

Authors:  Lionella Palego; Laura Betti; Alessandra Rossi; Gino Giannaccini
Journal:  J Amino Acids       Date:  2016-01-12

9.  In silico Determination of Some Conditions Leading to Glycolytic Oscillations and Their Interference With Some Other Processes in E. coli Cells.

Authors:  Gheorghe Maria
Journal:  Front Chem       Date:  2020-10-28       Impact factor: 5.221

  9 in total

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