Literature DB >> 15117260

Theory of single-molecule spectroscopy: beyond the ensemble average.

Eli Barkai1, YounJoon Jung, Robert Silbey.   

Abstract

Single-molecule spectroscopy (SMS) is a powerful experimental technique used to investigate a wide range of physical, chemical, and biophysical phenomena. The merit of SMS is that it does not require ensemble averaging, which is found in standard spectroscopic techniques. Thus SMS yields insight into complex fluctuation phenomena that cannot be observed using standard ensemble techniques. We investigate theoretical aspects of SMS, emphasizing (a) dynamical fluctuations (e.g., spectral diffusion, photon-counting statistics, antibunching, quantum jumps, triplet blinking, and nonergodic blinking) and (b) single-molecule fluctuations in disordered systems, specifically distribution of line shapes of single molecules in low-temperature glasses. Special emphasis is given to single-molecule systems that reveal surprising connections to Levy statistics (i.e., blinking of quantum dots and single molecules in glasses). We compare theory with experiment and mention open problems. Our work demonstrates that the theory of SMS is a complementary field of research for describing optical spectroscopy in the condensed phase.

Entities:  

Year:  2004        PMID: 15117260     DOI: 10.1146/annurev.physchem.55.111803.143246

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  20 in total

1.  Molecular fluorescence, phosphorescence, and chemiluminescence spectrometry.

Authors:  Kristin A Fletcher; Sayo O Fakayode; Mark Lowry; Sheryl A Tucker; Sharon L Neal; Irene W Kimaru; Matthew E McCarroll; Gabor Patonay; Philip B Oldham; Oleksandr Rusin; Robert M Strongin; Isiah M Warner
Journal:  Anal Chem       Date:  2006-06-15       Impact factor: 6.986

2.  Utilizing the information content in two-state trajectories.

Authors:  Ophir Flomenbom; Robert J Silbey
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-10       Impact factor: 11.205

Review 3.  Single-molecule fluorescence studies of protein folding and conformational dynamics.

Authors:  Xavier Michalet; Shimon Weiss; Marcus Jäger
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

4.  Construction of effective free energy landscape from single-molecule time series.

Authors:  Akinori Baba; Tamiki Komatsuzaki
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-28       Impact factor: 11.205

5.  New directions in single-molecule imaging and analysis.

Authors:  W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-30       Impact factor: 11.205

6.  Multiscale complex network of protein conformational fluctuations in single-molecule time series.

Authors:  Chun-Biu Li; Haw Yang; Tamiki Komatsuzaki
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-04       Impact factor: 11.205

Review 7.  smFRET studies of the 'encounter' complexes and subsequent intermediate states that regulate the selectivity of ligand binding.

Authors:  Colin D Kinz-Thompson; Ruben L Gonzalez
Journal:  FEBS Lett       Date:  2014-07-24       Impact factor: 4.124

8.  Quantitative interpretation of the randomness in single enzyme turnover times.

Authors:  Seongeun Yang; Jianshu Cao; Robert J Silbey; Jaeyoung Sung
Journal:  Biophys J       Date:  2011-08-03       Impact factor: 4.033

9.  Salivary proteins as predictors and controls for oral health.

Authors:  Dusa Vukosavljevic; William Custodio; Walter L Siqueira
Journal:  J Cell Commun Signal       Date:  2011-09-18       Impact factor: 5.782

Review 10.  Surface-enhanced Raman spectroscopy at single-molecule scale and its implications in biology.

Authors:  Yuling Wang; Joseph Irudayaraj
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-12-24       Impact factor: 6.237

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