Literature DB >> 15115182

Role of amino acid residues on the GS region of Stichopus arginine kinase and Danio creatine kinase.

Kouji Uda1, Tomohiko Suzuki.   

Abstract

Stichopus arginine kinase (AK) is a unique enzyme in that it evolved not from the AK gene but from the creatine kinase (CK) gene: the entire amino acid sequence is homologous with other CKs apart from the guanidine specificity region (GS region), which is identical in structure to that of AK. Ten independent mutations were introduced around the GS region in Stichopus AK. When an insertion or deletion was introduced near the GS region, the Vmax of the mutant enzyme was dramatically decreased to less than 0.1% of the wild type, suggesting that the length of the GS region is crucial for the recognition of the guanidine substrate. Replacement of Phe63 and Leu65 to Gly in the Stichopus enzyme caused a remarkable increase in the Kmarg. This indicates that Phe63 and Leu65 are associated with the arginine substrate-binding affinity. The hydrogen bond formed between the Asp62 and Arg193 residues is thought to play a key role in stabilizing the closed substrate-bound structure of AK. Mutants that eliminated this hydrogen bond had a considerably decreased Vmax, accompanied by a threefold increase in Kmarg. It is noted that the value of the Kmarg of the mutants became very close to the Kdarg value of the wild type. Six independent mutations were introduced in the GS region of Danio M-CK. Almost equivalent values of Kmcr and Kdcr in all of the mutants indicated that a typical synergism was completely lost. The results suggested that the Ile69 to Gly mutant, displaying a high Kmcr and a low Vmax, plays an important role in creatine-binding. This is consistent with the observation that in the structure of Torpedo CK, Ile69 provides a hydrophobic pocket to optimize creatine-binding.

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Year:  2004        PMID: 15115182     DOI: 10.1023/b:jopc.0000016258.55991.8a

Source DB:  PubMed          Journal:  Protein J        ISSN: 1572-3887            Impact factor:   2.371


  37 in total

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Authors:  M Eder; U Schlattner; A Becker; T Wallimann; W Kabsch; K Fritz-Wolf
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2.  Transition state structure of arginine kinase: implications for catalysis of bimolecular reactions.

Authors:  G Zhou; T Somasundaram; E Blanc; G Parthasarathy; W R Ellington; M S Chapman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

3.  Structure of mitochondrial creatine kinase.

Authors:  K Fritz-Wolf; T Schnyder; T Wallimann; W Kabsch
Journal:  Nature       Date:  1996-05-23       Impact factor: 49.962

4.  Nucleotide binding sites in wild-type creatine kinase and in W227Y mutant probed by photochemical release of nucleotides and infrared difference spectroscopy.

Authors:  C Raimbault; C Perraut; O Marcillat; R Buchet; C Vial
Journal:  Eur J Biochem       Date:  1997-12-15

5.  Arginine kinase evolved twice: evidence that echinoderm arginine kinase originated from creatine kinase.

Authors:  T Suzuki; M Kamidochi; N Inoue; H Kawamichi; Y Yazawa; T Furukohri; W R Ellington
Journal:  Biochem J       Date:  1999-06-15       Impact factor: 3.857

6.  Mutagenesis of two acidic active site residues in human muscle creatine kinase: implications for the catalytic mechanism.

Authors:  J S Cantwell; W R Novak; P F Wang; M J McLeish; G L Kenyon; P C Babbitt
Journal:  Biochemistry       Date:  2001-03-13       Impact factor: 3.162

7.  Stichopus japonicus arginine kinase: gene structure and unique substrate recognition system.

Authors:  T Suzuki; Y Yamamoto; M Umekawa
Journal:  Biochem J       Date:  2000-11-01       Impact factor: 3.857

8.  Hybridization of matrix-bound MM-creatine kinase with BB-creatine kinase and arginine kinase.

Authors:  S R Reddy; D C Watts
Journal:  Comp Biochem Physiol Biochem Mol Biol       Date:  1994-05

9.  Crystal structure of rabbit muscle creatine kinase.

Authors:  J K Rao; G Bujacz; A Wlodawer
Journal:  FEBS Lett       Date:  1998-11-13       Impact factor: 4.124

10.  Role of quaternary structure in muscle creatine kinase stability: tryptophan 210 is important for dimer cohesion.

Authors:  C Perraut; E Clottes; C Leydier; C Vial; O Marcillat
Journal:  Proteins       Date:  1998-07-01
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  3 in total

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Authors:  Xiaogang Niu; Lei Bruschweiler-Li; Omar Davulcu; Jack J Skalicky; Rafael Brüschweiler; Michael S Chapman
Journal:  J Mol Biol       Date:  2010-11-12       Impact factor: 5.469

2.  A novel arginine kinase with substrate specificity towards D-arginine.

Authors:  Kouji Uda; Tomohiko Suzuki
Journal:  Protein J       Date:  2007-08       Impact factor: 2.371

3.  Molecular cloning and characterization of taurocyamine kinase from Clonorchis sinensis: a candidate chemotherapeutic target.

Authors:  Jing-Ying Xiao; Ji-Yun Lee; Shinji Tokuhiro; Mitsuru Nagataki; Blanca R Jarilla; Haruka Nomura; Tae Im Kim; Sung-Jong Hong; Takeshi Agatsuma
Journal:  PLoS Negl Trop Dis       Date:  2013-11-21
  3 in total

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