Literature DB >> 15114360

E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains.

Maryann E Martone1, Amarnath Gupta, Mark H Ellisman.   

Abstract

Imaging, from magnetic resonance imaging (MRI) to localization of specific macromolecules by microscopies, has been one of the driving forces behind neuroinformatics efforts of the past decade. Many web-accessible resources have been created, ranging from simple data collections to highly structured databases. Although many challenges remain in adapting neuroscience to the new electronic forum envisioned by neuroinformatics proponents, these efforts have succeeded in formalizing the requirements for effective data sharing and data integration across multiple sources. In this perspective, we discuss the importance of spatial systems and ontologies for proper modeling of neuroscience data and their use in a large-scale data integration effort, the Biomedical Informatics Research Network (BIRN).

Mesh:

Year:  2004        PMID: 15114360     DOI: 10.1038/nn1229

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  40 in total

1.  NeuroLOG: sharing neuroimaging data using an ontology-based federated approach.

Authors:  Bernard Gibaud; Gilles Kassel; Michel Dojat; Bénédicte Batrancourt; Franck Michel; Alban Gaignard; Johan Montagnat
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

2.  neuroVIISAS: approaching multiscale simulation of the rat connectome.

Authors:  Oliver Schmitt; Peter Eipert
Journal:  Neuroinformatics       Date:  2012-07

3.  Internet-enabled high-resolution brain mapping and virtual microscopy.

Authors:  Shawn Mikula; Issac Trotts; James M Stone; Edward G Jones
Journal:  Neuroimage       Date:  2007-01-16       Impact factor: 6.556

4.  Using web ontology language to integrate heterogeneous databases in the neurosciences.

Authors:  Hugo Y K Lam; Luis Marenco; Gordon M Shepherd; Perry L Miller; Kei-Hoi Cheung
Journal:  AMIA Annu Symp Proc       Date:  2006

5.  NeuroExtract: facilitating neuroscience-oriented retrieval from broadly-focused bioscience databases using text-based query mediation.

Authors:  Chiquito J Crasto; Peter Masiar; Perry L Miller
Journal:  J Am Med Inform Assoc       Date:  2007-02-28       Impact factor: 4.497

6.  The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration.

Authors:  Barry Smith; Michael Ashburner; Cornelius Rosse; Jonathan Bard; William Bug; Werner Ceusters; Louis J Goldberg; Karen Eilbeck; Amelia Ireland; Christopher J Mungall; Neocles Leontis; Philippe Rocca-Serra; Alan Ruttenberg; Susanna-Assunta Sansone; Richard H Scheuermann; Nigam Shah; Patricia L Whetzel; Suzanna Lewis
Journal:  Nat Biotechnol       Date:  2007-11       Impact factor: 54.908

7.  Toward a workbench for rodent brain image data: systems architecture and design.

Authors:  Ivar A Moene; Shankar Subramaniam; Dmitri Darin; Trygve B Leergaard; Jan G Bjaalie
Journal:  Neuroinformatics       Date:  2007

8.  High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology.

Authors:  G Allan Johnson; Anjum Ali-Sharief; Alexandra Badea; Jeffrey Brandenburg; Gary Cofer; Boma Fubara; Sally Gewalt; Laurence W Hedlund; Lucy Upchurch
Journal:  Neuroimage       Date:  2007-05-18       Impact factor: 6.556

9.  Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience.

Authors:  Matthias Samwald; Huajun Chen; Alan Ruttenberg; Ernest Lim; Luis Marenco; Perry Miller; Gordon Shepherd; Kei-Hoi Cheung
Journal:  Artif Intell Med       Date:  2009-12-16       Impact factor: 5.326

10.  Region of interest template for the human basal ganglia: comparing EPI and standardized space approaches.

Authors:  Janey Prodoehl; Hong Yu; Deborah M Little; Ivy Abraham; David E Vaillancourt
Journal:  Neuroimage       Date:  2007-09-22       Impact factor: 6.556

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