Literature DB >> 15107004

A 3D graphical representation of RNA secondary structures.

B Liao1, T-M Wang.   

Abstract

In this paper, we proposed a 3-D graphical representation of RNA secondary structures. Based on this representation, we outline an approach by constructing a 3-component vector whose components are the normalized leading eigenvalues of the L/L matrices associated with RNA secondary structure. The examination of similarities/dissimilarities among the secondary structure at the 3'-terminus of different viruses illustrates the utility of the approach.

Mesh：

Substances：

Year:  2004        PMID： 15107004     DOI： 10.1080/07391102.2004.10506972

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN： 0739-1102


  8 in total

1.  Study of peptide fingerprints of parasite proteins and drug-DNA interactions with Markov-Mean-Energy invariants of biopolymer molecular-dynamic lattice networks.

Authors:  Lázaro Guillermo Pérez-Montoto; María Auxiliadora Dea-Ayuela; Francisco J Prado-Prado; Francisco Bolas-Fernández; Florencio M Ubeira; Humberto González-Díaz
Journal:  Polymer (Guildf)       Date:  2009-06-03       Impact factor: 4.430

2.  A method for rapid similarity analysis of RNA secondary structures.

Authors:  Na Liu; Tianming Wang
Journal:  BMC Bioinformatics       Date:  2006-11-08       Impact factor: 3.169

3.  A 2D graphical representation of the sequences of DNA based on triplets and its application.

Authors:  Sai Zou; Lei Wang; Junfeng Wang
Journal:  EURASIP J Bioinform Syst Biol       Date:  2014-01-02

4.  Determination of k-mer density in a DNA sequence and subsequent cluster formation algorithm based on the application of electronic filter.

Authors:  Bimal Kumar Sarkar; Ashish Ranjan Sharma; Manojit Bhattacharya; Garima Sharma; Sang-Soo Lee; Chiranjib Chakraborty
Journal:  Sci Rep       Date:  2021-07-01       Impact factor: 4.379

5.  Multi-scale RNA comparison based on RNA triple vector curve representation.

Authors:  Ying Li; Ming Duan; Yanchun Liang
Journal:  BMC Bioinformatics       Date:  2012-10-30       Impact factor: 3.169

6.  A Dynamic 3D Graphical Representation for RNA Structure Analysis and Its Application in Non-Coding RNA Classification.

Authors:  Yi Zhang; Haiyun Huang; Xiaoqing Dong; Yiliang Fang; Kejing Wang; Lijuan Zhu; Ke Wang; Tao Huang; Jialiang Yang
Journal:  PLoS One       Date:  2016-05-23       Impact factor: 3.240

7.  Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices.

Authors:  Alcides Perez-Bello; Cristian Robert Munteanu; Florencio M Ubeira; Alexandre Lopes De Magalhães; Eugenio Uriarte; Humberto González-Díaz
Journal:  J Theor Biol       Date:  2008-10-17       Impact factor: 2.691

8.  QSAR for RNases and theoretic-experimental study of molecular diversity on peptide mass fingerprints of a new Leishmania infantum protein.

Authors:  Humberto González-Díaz; María A Dea-Ayuela; Lázaro G Pérez-Montoto; Francisco J Prado-Prado; Guillermín Agüero-Chapín; Francisco Bolas-Fernández; Roberto I Vazquez-Padrón; Florencio M Ubeira
Journal:  Mol Divers       Date:  2009-07-04       Impact factor: 2.943
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.