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Literature DB >> 15105828

From microarray data to results. Workshop on genomic approaches to microarray data analysis.

Thomas Schlitt¹, Patrick Kemmeren.

Abstract

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Year: 2004 PMID： 15105828 PMCID： PMC1299059 DOI： 10.1038/sj.embor.7400156

Source DB: PubMed Journal: EMBO Rep ISSN： 1469-221X Impact factor: 8.807

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13 in total

1. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors: M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal: Nat Genet Date: 2000-05 Impact factor: 38.330

2. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Authors: A Brazma; P Hingamp; J Quackenbush; G Sherlock; P Spellman; C Stoeckert; J Aach; W Ansorge; C A Ball; H C Causton; T Gaasterland; P Glenisson; F C Holstege; I F Kim; V Markowitz; J C Matese; H Parkinson; A Robinson; U Sarkans; S Schulze-Kremer; J Stewart; R Taylor; J Vilo; M Vingron
Journal: Nat Genet Date: 2001-12 Impact factor: 38.330

From microarray data to results. Workshop on genomic approaches to microarray data analysis.

1. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

2. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

3. Mining functional information associated with expression arrays.

4. Monitoring global messenger RNA changes in externally controlled microarray experiments.

5. Identifying differentially expressed genes using false discovery rate controlling procedures.

6. Variance stabilization applied to microarray data calibration and to the quantification of differential expression.

7. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.

8. GEPAS: A web-based resource for microarray gene expression data analysis.

9. Computational detection of cis -regulatory modules.

10. Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment.