Literature DB >> 15105279

GDPC: connecting researchers with multiple integrated data sources.

Terry M Casstevens1, Edward S Buckler.   

Abstract

UNLABELLED: The goal of this project is to simplify access to genomic diversity and phenotype data, thereby encouraging reuse of this data. The Genomic Diversity and Phenotype Connection (GDPC) accomplishes this by retrieving data from one or more data sources and by allowing researchers to analyze integrated data in a standard format. GDPC is written in JAVA and provides (1) data sources available as web services that transfer XML formatted data via the SOAP protocol; (2) a JAVA API for programmatic access to data sources; and (3) a front-end application that allows users to manage data sources, retrieve data based on filters, sort/group data based on property values and save/open the data as XML files. AVAILABILITY: The source code, compiled code, documentation and GDPC Browser are freely available at: www.maizegenetics.net/gdpc/index.html the current release of GDPC is version 1.0, with updated releases planned for the future. Comments are welcome.

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Mesh:

Year:  2004        PMID: 15105279     DOI: 10.1093/bioinformatics/bth277

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  4 in total

1.  GERMINATE. a generic database for integrating genotypic and phenotypic information for plant genetic resource collections.

Authors:  Jennifer M Lee; Guy F Davenport; David Marshall; T H Noel Ellis; Michael J Ambrose; Jo Dicks; Theo J L van Hintum; Andrew J Flavell
Journal:  Plant Physiol       Date:  2005-10       Impact factor: 8.340

Review 2.  Using metabolomics to estimate unintended effects in transgenic crop plants: problems, promises, and opportunities.

Authors:  Owen A Hoekenga
Journal:  J Biomol Tech       Date:  2008-07

3.  Panzea: a database and resource for molecular and functional diversity in the maize genome.

Authors:  Wei Zhao; Payan Canaran; Rebecca Jurkuta; Theresa Fulton; Jeffrey Glaubitz; Edward Buckler; John Doebley; Brandon Gaut; Major Goodman; Jim Holland; Stephen Kresovich; Michael McMullen; Lincoln Stein; Doreen Ware
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

4.  The generation challenge programme platform: semantic standards and workbench for crop science.

Authors:  Richard Bruskiewich; Martin Senger; Guy Davenport; Manuel Ruiz; Mathieu Rouard; Tom Hazekamp; Masaru Takeya; Koji Doi; Kouji Satoh; Marcos Costa; Reinhard Simon; Jayashree Balaji; Akinnola Akintunde; Ramil Mauleon; Samart Wanchana; Trushar Shah; Mylah Anacleto; Arllet Portugal; Victor Jun Ulat; Supat Thongjuea; Kyle Braak; Sebastian Ritter; Alexis Dereeper; Milko Skofic; Edwin Rojas; Natalia Martins; Georgios Pappas; Ryan Alamban; Roque Almodiel; Lord Hendrix Barboza; Jeffrey Detras; Kevin Manansala; Michael Jonathan Mendoza; Jeffrey Morales; Barry Peralta; Rowena Valerio; Yi Zhang; Sergio Gregorio; Joseph Hermocilla; Michael Echavez; Jan Michael Yap; Andrew Farmer; Gary Schiltz; Jennifer Lee; Terry Casstevens; Pankaj Jaiswal; Ayton Meintjes; Mark Wilkinson; Benjamin Good; James Wagner; Jane Morris; David Marshall; Anthony Collins; Shoshi Kikuchi; Thomas Metz; Graham McLaren; Theo van Hintum
Journal:  Int J Plant Genomics       Date:  2008
  4 in total

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