Literature DB >> 15103162

A comparison between experimental and theoretical aspherical-atom scattering factors for charge-density refinement of large molecules.

Virginie Pichon-Pesme1, Christian Jelsch, Benoit Guillot, Claude Lecomte.   

Abstract

The differences between two databases describing the polypeptide main chain in terms of charge-density parameters, directly usable in protein structure refinements, are discussed. These databases contain averaged multipole populations of peptide pseudo-atoms obtained from refinement against theoretical simulated data and against high-resolution experimental data on small peptide or amino acid molecules. The main discrepancy becomes apparent when electrostatic properties are calculated.

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Year:  2004        PMID: 15103162     DOI: 10.1107/S0108767304004246

Source DB:  PubMed          Journal:  Acta Crystallogr A        ISSN: 0108-7673            Impact factor:   2.290


  8 in total

1.  Structural determinants of the high thermal stability of SsoPox from the hyperthermophilic archaeon Sulfolobus solfataricus.

Authors:  Pompea Del Vecchio; Mikael Elias; Luigia Merone; Giuseppe Graziano; Jérôme Dupuy; Luigi Mandrich; Paola Carullo; Bertrand Fournier; Daniel Rochu; Mosè Rossi; Patrick Masson; Eric Chabriere; Giuseppe Manco
Journal:  Extremophiles       Date:  2009-02-27       Impact factor: 2.395

2.  Ultrahigh-resolution crystallography and related electron density and electrostatic properties in proteins.

Authors:  Claude Lecomte; Christian Jelsch; Benoît Guillot; Bertrand Fournier; Angélique Lagoutte
Journal:  J Synchrotron Radiat       Date:  2008-04-18       Impact factor: 2.616

3.  Topological Properties of Chemical Bonds from Static and Dynamic Electron Densities.

Authors:  Siriyara Jagannatha Prathapa; Jeanette Held; Sander van Smaalen
Journal:  Z Anorg Allg Chem       Date:  2013-07-23       Impact factor: 1.492

4.  Yes, one can obtain better quality structures from routine X-ray data collection.

Authors:  W Fabiola Sanjuan-Szklarz; Anna A Hoser; Matthias Gutmann; Anders Østergaard Madsen; Krzysztof Woźniak
Journal:  IUCrJ       Date:  2016-01-01       Impact factor: 4.769

5.  Transferable Machine-Learning Model of the Electron Density.

Authors:  Andrea Grisafi; Alberto Fabrizio; Benjamin Meyer; David M Wilkins; Clemence Corminboeuf; Michele Ceriotti
Journal:  ACS Cent Sci       Date:  2018-12-26       Impact factor: 14.553

6.  Theoretical 3D electron diffraction electrostatic potential maps of proteins modeled with a multipolar pseudoatom data bank.

Authors:  Marta Kulik; Michał Leszek Chodkiewicz; Paulina Maria Dominiak
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-07-14       Impact factor: 5.699

7.  The active site of hen egg-white lysozyme: flexibility and chemical bonding.

Authors:  Jeanette Held; Sander van Smaalen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-03-21

8.  A Comparative Study of Transferable Aspherical Pseudoatom Databank and Classical Force Fields for Predicting Electrostatic Interactions in Molecular Dimers.

Authors:  Prashant Kumar; Sławomir A Bojarowski; Katarzyna N Jarzembska; Sławomir Domagała; Kenno Vanommeslaeghe; Alexander D Mackerell; Paulina M Dominiak
Journal:  J Chem Theory Comput       Date:  2014-02-21       Impact factor: 6.006

  8 in total

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