Literature DB >> 15102498

A computer image processing system for quantification of zebrafish behavior.

Satoru Kato1, Takashi Nakagawa, Masato Ohkawa, Kenichiro Muramoto, Osamu Oyama, Akihito Watanabe, Hiroshi Nakashima, Tetsu Nemoto, Kayo Sugitani.   

Abstract

The tropical zebrafish (Danio rerio) has frequently been used for investigating developmental biology. Here, we developed a computer image processing system for quantifying zebrafish behavior. We could acquire an image of zebrafish freely moving in an aquarium using a CCD camera through a graphic I/O board. To acquire the image of moving zebrafish in real time, we required high spatial (256 x 256 pixels) and temporal (10 frames/s) resolution. Such a high speed of data analysis was accomplished using a skipping search method. By using a small aquarium, trackings of newborn zebrafish could be traced. The velocity of adult zebrafish (7.2 cm/s) was far faster than that of newborn zebrafish (1.8 cm/s). Furthermore, by separation of occluded images of two fish, we could acquire images of the two zebrafish. They behaved as in a school in which one fish chased the other. The chasing was defined by the distance, angle and approach of the two fishes. The chasing ratio of pairs of zebrafish was 37%, whereas those of pairs of different fish were significantly reduced to less than 20%. The present image processing system is a very useful tool for quantitatively scoring the schooling behavior of multiple fish.

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Year:  2004        PMID: 15102498     DOI: 10.1016/j.jneumeth.2003.09.028

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  15 in total

1.  An automated method for cell detection in zebrafish.

Authors:  Tianming Liu; Gang Li; Jingxin Nie; Ashley Tarokh; Xiaobo Zhou; Lei Guo; Jarema Malicki; Weiming Xia; Stephen T C Wong
Journal:  Neuroinformatics       Date:  2008-02-21

Review 2.  Automated processing of zebrafish imaging data: a survey.

Authors:  Ralf Mikut; Thomas Dickmeis; Wolfgang Driever; Pierre Geurts; Fred A Hamprecht; Bernhard X Kausler; María J Ledesma-Carbayo; Raphaël Marée; Karol Mikula; Periklis Pantazis; Olaf Ronneberger; Andres Santos; Rainer Stotzka; Uwe Strähle; Nadine Peyriéras
Journal:  Zebrafish       Date:  2013-06-12       Impact factor: 1.985

Review 3.  The neurogenetic frontier--lessons from misbehaving zebrafish.

Authors:  Harold A Burgess; Michael Granato
Journal:  Brief Funct Genomic Proteomic       Date:  2008-10-04

4.  Shoaling develops with age in Zebrafish (Danio rerio).

Authors:  Christine Buske; Robert Gerlai
Journal:  Prog Neuropsychopharmacol Biol Psychiatry       Date:  2010-09-15       Impact factor: 5.067

5.  Coordinated and cohesive movement of two small conspecific fish induced by eliciting a simultaneous optomotor response.

Authors:  Haruka Imada; Masahito Hoki; Yuji Suehiro; Teruhiro Okuyama; Daisuke Kurabayashi; Atsuko Shimada; Kiyoshi Naruse; Hiroyuki Takeda; Takeo Kubo; Hideaki Takeuchi
Journal:  PLoS One       Date:  2010-06-22       Impact factor: 3.240

6.  Tracking zebrafish larvae in group--status and perspectives.

Authors:  Pierre R Martineau; Philippe Mourrain
Journal:  Methods       Date:  2013-05-24       Impact factor: 3.608

Review 7.  Towards a comprehensive catalog of zebrafish behavior 1.0 and beyond.

Authors:  Allan V Kalueff; Michael Gebhardt; Adam Michael Stewart; Jonathan M Cachat; Mallorie Brimmer; Jonathan S Chawla; Cassandra Craddock; Evan J Kyzar; Andrew Roth; Samuel Landsman; Siddharth Gaikwad; Kyle Robinson; Erik Baatrup; Keith Tierney; Angela Shamchuk; William Norton; Noam Miller; Teresa Nicolson; Oliver Braubach; Charles P Gilman; Julian Pittman; Denis B Rosemberg; Robert Gerlai; David Echevarria; Elisabeth Lamb; Stephan C F Neuhauss; Wei Weng; Laure Bally-Cuif; Henning Schneider
Journal:  Zebrafish       Date:  2013-03       Impact factor: 1.985

8.  idTracker: tracking individuals in a group by automatic identification of unmarked animals.

Authors:  Alfonso Pérez-Escudero; Julián Vicente-Page; Robert C Hinz; Sara Arganda; Gonzalo G de Polavieja
Journal:  Nat Methods       Date:  2014-06-01       Impact factor: 28.547

9.  Three-dimensional neurophenotyping of adult zebrafish behavior.

Authors:  Jonathan Cachat; Adam Stewart; Eli Utterback; Peter Hart; Siddharth Gaikwad; Keith Wong; Evan Kyzar; Nadine Wu; Allan V Kalueff
Journal:  PLoS One       Date:  2011-03-07       Impact factor: 3.240

10.  Automatically detect and track multiple fish swimming in shallow water with frequent occlusion.

Authors:  Zhi-Ming Qian; Xi En Cheng; Yan Qiu Chen
Journal:  PLoS One       Date:  2014-09-10       Impact factor: 3.240

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