Literature DB >> 15102450

Dial tm for rescue: tmRNA engages ribosomes stalled on defective mRNAs.

Peter W Haebel1, Sascha Gutmann, Nenad Ban.   

Abstract

Ribosomes translate genetic information encoded by mRNAs into protein chains with high fidelity. Truncated mRNAs lacking a stop codon will cause the synthesis of incomplete peptide chains and stall translating ribosomes. In bacteria, a ribonucleoprotein complex composed of tmRNA, a molecule that combines the functions of tRNAs and mRNAs, and small protein B (SmpB) rescues stalled ribosomes. The SmpB-tmRNA complex binds to the stalled ribosome, allowing translation to resume at a short internal tmRNA open reading frame that encodes a protein degradation tag. The aberrant protein is released when the ribosome reaches the stop codon at the end of the tmRNA open reading frame and the fused peptide tag targets it for degradation by cellular proteases. The recently determined NMR structures of SmpB, the crystal structure of the SmpB-tmRNA complex and the cryo-EM structure of the SmpB-tmRNA-EF-Tu-ribosome complex have provided first detailed insights into the intricate mechanisms involved in ribosome rescue.

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Year:  2004        PMID: 15102450     DOI: 10.1016/j.sbi.2004.01.010

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  23 in total

1.  Non-stop mRNA decay initiates at the ribosome.

Authors:  Zhiyun Ge; Preeti Mehta; Jamie Richards; A Wali Karzai
Journal:  Mol Microbiol       Date:  2010-09-27       Impact factor: 3.501

2.  Functional SmpB-ribosome interactions require tmRNA.

Authors:  Thomas R Sundermeier; A Wali Karzai
Journal:  J Biol Chem       Date:  2007-10-02       Impact factor: 5.157

3.  Antibiotic inducibility of the MexXY multidrug efflux system of Pseudomonas aeruginosa: involvement of the antibiotic-inducible PA5471 gene product.

Authors:  Yuji Morita; Mara L Sobel; Keith Poole
Journal:  J Bacteriol       Date:  2006-03       Impact factor: 3.490

4.  Quality control of bacterial mRNA decoding and decay.

Authors:  Jamie Richards; Thomas Sundermeier; Anton Svetlanov; A Wali Karzai
Journal:  Biochim Biophys Acta       Date:  2008-03-04

5.  Evolutionary patterns of non-coding RNAs.

Authors:  Athanasius F Bompfünewerer; Christoph Flamm; Claudia Fried; Guido Fritzsch; Ivo L Hofacker; Jörg Lehmann; Kristin Missal; Axel Mosig; Bettina Müller; Sonja J Prohaska; Bärbel M R Stadler; Peter F Stadler; Andrea Tanzer; Stefan Washietl; Christina Witwer
Journal:  Theory Biosci       Date:  2005-04       Impact factor: 1.919

6.  Peptide and protein binding in the axial channel of Hsp104. Insights into the mechanism of protein unfolding.

Authors:  Ronnie Lum; Monika Niggemann; John R Glover
Journal:  J Biol Chem       Date:  2008-08-28       Impact factor: 5.157

7.  Structural features of the tmRNA-ribosome interaction.

Authors:  Elizaveta Y Bugaeva; Serhiy Surkov; Andrey V Golovin; Lars-Göran Ofverstedt; Ulf Skoglund; Leif A Isaksson; Alexey A Bogdanov; Olga V Shpanchenko; Olga A Dontsova
Journal:  RNA       Date:  2009-10-27       Impact factor: 4.942

Review 8.  Computational methods in noncoding RNA research.

Authors:  Ariane Machado-Lima; Hernando A del Portillo; Alan Mitchell Durham
Journal:  J Math Biol       Date:  2007-09-04       Impact factor: 2.259

9.  The ancient history of the structure of ribonuclease P and the early origins of Archaea.

Authors:  Feng-Jie Sun; Gustavo Caetano-Anollés
Journal:  BMC Bioinformatics       Date:  2010-03-24       Impact factor: 3.169

Review 10.  Bacteria as computers making computers.

Authors:  Antoine Danchin
Journal:  FEMS Microbiol Rev       Date:  2008-11-07       Impact factor: 16.408

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