Literature DB >> 15102447

From RPA to BRCA2: lessons from single-stranded DNA binding by the OB-fold.

Alexey Bochkarev1, Elena Bochkareva.   

Abstract

Recent years have witnessed tremendous progress in our structural and biophysical understanding of how replication protein A (RPA), a major nuclear ssDNA-binding protein (SSB), binds DNA. The four ssDNA-binding domains of RPA have the characteristic OB (oligonucleotide/oligosaccharide-binding) fold and contact DNA with specific polarity via a hierarchy-driven dynamic pathway. A growing mass of data suggest that many aspects of the ssDNA binding mechanism are conserved among SSBs of different origin. However, this conservation is not restricted to the SSB class. The concepts of ssDNA binding by the OB-fold, first derived from the RPA structure, have been successfully applied to the functional characterization of the BRCA2 (breast cancer susceptibility gene 2) protein. The BRCA2 structure, in its turn, has helped to better understand RPA function.

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Year:  2004        PMID: 15102447     DOI: 10.1016/j.sbi.2004.01.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  117 in total

1.  Theoretical prediction of the binding free energy for mutants of replication protein A.

Authors:  Claudio Carra; Janapriya Saha; Francis A Cucinotta
Journal:  J Mol Model       Date:  2011-12-10       Impact factor: 1.810

2.  Structural basis for Tetrahymena telomerase processivity factor Teb1 binding to single-stranded telomeric-repeat DNA.

Authors:  Zhixiong Zeng; Bosun Min; Jing Huang; Kyungah Hong; Yuting Yang; Kathleen Collins; Ming Lei
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-05       Impact factor: 11.205

Review 3.  Single-molecule views of protein movement on single-stranded DNA.

Authors:  Taekjip Ha; Alexander G Kozlov; Timothy M Lohman
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

4.  OB-fold domain of KREPA4 mediates high-affinity interaction with guide RNA and possesses annealing activity.

Authors:  Smriti Kala; Reza Salavati
Journal:  RNA       Date:  2010-08-16       Impact factor: 4.942

5.  Functional characterization of a cancer causing mutation in human replication protein A.

Authors:  Cathy S Hass; Lokesh Gakhar; Marc S Wold
Journal:  Mol Cancer Res       Date:  2010-06-29       Impact factor: 5.852

6.  Structural bases of dimerization of yeast telomere protein Cdc13 and its interaction with the catalytic subunit of DNA polymerase α.

Authors:  Jia Sun; Yuting Yang; Ke Wan; Ninghui Mao; Tai-Yuan Yu; Yi-Chien Lin; Diane C DeZwaan; Brian C Freeman; Jing-Jer Lin; Neal F Lue; Ming Lei
Journal:  Cell Res       Date:  2010-09-28       Impact factor: 25.617

7.  Specificity of binding of single-stranded DNA-binding protein to its target.

Authors:  Luda S Shlyakhtenko; Alexander Y Lushnikov; Atsushi Miyagi; Yuri L Lyubchenko
Journal:  Biochemistry       Date:  2012-02-06       Impact factor: 3.162

8.  BRCA1 and BRCA2 protect against oxidative DNA damage converted into double-strand breaks during DNA replication.

Authors:  Ram Fridlich; Devi Annamalai; Rohini Roy; Giana Bernheim; Simon N Powell
Journal:  DNA Repair (Amst)       Date:  2015-03-17

9.  Structural mechanism of RPA loading on DNA during activation of a simple pre-replication complex.

Authors:  Xiaohua Jiang; Vitaly Klimovich; Alphonse I Arunkumar; Erik B Hysinger; Yingda Wang; Robert D Ott; Gulfem D Guler; Brian Weiner; Walter J Chazin; Ellen Fanning
Journal:  EMBO J       Date:  2006-11-16       Impact factor: 11.598

10.  Stn1-Ten1 is an Rpa2-Rpa3-like complex at telomeres.

Authors:  Jia Sun; Eun Young Yu; Yuting Yang; Laura A Confer; Steven H Sun; Ke Wan; Neal F Lue; Ming Lei
Journal:  Genes Dev       Date:  2009-12-15       Impact factor: 11.361

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