Literature DB >> 15096570

Detection of genomic polymorphisms associated with venous thrombosis using the invader biplex assay.

Madhumita Patnaik1, Jeffrey S Dlott, Robert N Fontaine, M T Subbiah, Martin J Hessner, Kelly A Joyner, Marlies R Ledford, Eduardo C Lau, Cynthia Moehlenkamp, Jean Amos, Bailing Zhang, Thomas M Williams.   

Abstract

A multi-site study to assess the accuracy and performance of the biplex Invader assay for genotyping five polymorphisms implicated in venous thrombosis was carried out in seven laboratories. Genotyping results obtained using the Invader biplex assay were compared to those obtained from a reference method, either allele-specific polymerase chain reaction (AS-PCR), restriction fragment length polymorphism (PCR-RFLP) or PCR-mass spectrometry. Results were compared for five loci associated with venous thrombosis: Factor V Leiden, Factor II (prothrombin) G20210A, methylenetetrahydrofolate reductase (MTHFR) C677T and A1298C, and plasminogen activator inhibitor (PAI-1) 4G/5G. Of a total of 1448 genotypes tested in this study, there were 22 samples that gave different results between the Invader biplex assay and the PCR-based methods. On further testing, 21 were determined to be correctly genotyped by the Invader Assay and only a single discrepancy was resolved in favor of the PCR-based assays. The compiled results demonstrate that the Invader biplex assay provides results more than 99.9% concordant with standard PCR-based techniques and is a rapid and highly accurate alternative to target amplification-based methods.

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Year:  2004        PMID: 15096570      PMCID: PMC1867477          DOI: 10.1016/S1525-1578(10)60502-8

Source DB:  PubMed          Journal:  J Mol Diagn        ISSN: 1525-1578            Impact factor:   5.568


  32 in total

1.  A high-throughput SNP typing system for genome-wide association studies.

Authors:  Y Ohnishi; T Tanaka; K Ozaki; R Yamada; H Suzuki; Y Nakamura
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2.  Universal SNP genotyping assay with fluorescence polarization detection.

Authors:  T M Hsu; X Chen; S Duan; R D Miller; P Y Kwok
Journal:  Biotechniques       Date:  2001-09       Impact factor: 1.993

3.  High-throughput genotyping of single nucleotide polymorphisms using new biplex invader technology.

Authors:  Michael Olivier; Lee-Ming Chuang; Mau-Song Chang; Ying-Tsung Chen; Dee Pei; Koustubh Ranade; Anniek de Witte; Jennifer Allen; Nguyet Tran; David Curb; Richard Pratt; Henk Neefs; Monika de Arruda Indig; Scott Law; Bruce Neri; Lu Wang; David R Cox
Journal:  Nucleic Acids Res       Date:  2002-06-15       Impact factor: 16.971

4.  A second common variant in the methylenetetrahydrofolate reductase (MTHFR) gene and its relationship to MTHFR enzyme activity, homocysteine, and cardiovascular disease risk.

Authors:  K J Lievers; G H Boers; P Verhoef; M den Heijer; L A Kluijtmans; N M van der Put; F J Trijbels; H J Blom
Journal:  J Mol Med (Berl)       Date:  2001-09       Impact factor: 4.599

Review 5.  Genetic polymorphisms associated with venous and arterial thrombosis: an overview.

Authors:  Kandice Kottke-Marchant
Journal:  Arch Pathol Lab Med       Date:  2002-03       Impact factor: 5.534

6.  4G/5G polymorphism of the plasminogen activator inhibitor-1 gene and insertion/deletion polymorphism of the tissue-type plasminogen activator gene in atherothrombotic stroke.

Authors:  C O Bang; H K Park; M Y Ahn; H K Shin; K Y Hwang; S Y Hong
Journal:  Cerebrovasc Dis       Date:  2001       Impact factor: 2.762

7.  Single nucleotide polymorphisms in the methylenetetrahydrofolate reductase gene are common in US Caucasian and Hispanic American populations.

Authors:  F Peng; L A Labelle; B J Rainey; G J Tsongalis
Journal:  Int J Mol Med       Date:  2001-11       Impact factor: 4.101

8.  The two allele sequences of a common polymorphism in the promoter of the plasminogen activator inhibitor-1 (PAI-1) gene respond differently to interleukin-1 in HepG2 cells.

Authors:  S J Dawson; B Wiman; A Hamsten; F Green; S Humphries; A M Henney
Journal:  J Biol Chem       Date:  1993-05-25       Impact factor: 5.157

9.  Characterization of cytochrome P450 2D6 alleles using the Invader system.

Authors:  Matt Nevilie; Rebecca Selzer; Brian Aizenstein; Megan Maguire; Kirk Hogan; Robert Walton; Ken Welsh; Bruce Neri; Monika de Arruda
Journal:  Biotechniques       Date:  2002-06       Impact factor: 1.993

Review 10.  Polymorphisms in the methylenetetrahydrofolate reductase gene: clinical consequences.

Authors:  B Schwahn; R Rozen
Journal:  Am J Pharmacogenomics       Date:  2001
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  5 in total

1.  PAI-1 4G-4G and MTHFR 677TT in non-hepatitis C virus/hepatitis B virus-related liver cirrhosis.

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Journal:  World J Hepatol       Date:  2015-12-18

2.  Evolving methods for single nucleotide polymorphism detection: Factor V Leiden mutation detection.

Authors:  Herin Oh; Cassandra L Smith
Journal:  J Clin Lab Anal       Date:  2011       Impact factor: 2.352

3.  Laboratory informatics based evaluation of methylene tetrahydrofolate reductase C677T genetic test overutilization.

Authors:  David A Cohen; Brian H Shirts; Brian R Jackson; Lisa S Parker
Journal:  J Pathol Inform       Date:  2013-11-29

4.  A novel procedure for genotyping of single nucleotide polymorphisms in trisomy with genomic DNA and the invader assay.

Authors:  Kelly J Duffy; Jack Littrell; Adam Locke; Stephanie L Sherman; Michael Olivier
Journal:  Nucleic Acids Res       Date:  2008-10-21       Impact factor: 16.971

5.  The Pharmacokinetics and Pharmacodynamics of Prasugrel and Clopidogrel in Healthy Japanese Volunteers.

Authors:  Kazuo Umemura; Takayuki Iwaki
Journal:  Clin Pharmacol Drug Dev       Date:  2016-04-25
  5 in total

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