Literature DB >> 15089712

Enhancement of the stability of genetic switches by overlapping upstream regulatory domains.

Patrick B Warren1, Pieter Rein ten Wolde.   

Abstract

We study genetic switches formed from pairs of mutually repressing operons. The switch stability is characterized by a well-defined lifetime, which grows very rapidly, albeit subexponentially, with the number of copies of the most-expressed transcription factor. The switch stability can be drastically enhanced by overlapping the upstream regulatory domains such that competing regulatory molecules mutually exclude each other. Our results suggest that robustness against biochemical noise can provide a selection pressure that drives operons together in the course of evolution.

Mesh:

Year:  2004        PMID: 15089712     DOI: 10.1103/PhysRevLett.92.128101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  22 in total

1.  Stability and multiattractor dynamics of a toggle switch based on a two-stage model of stochastic gene expression.

Authors:  Michael Strasser; Fabian J Theis; Carsten Marr
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

2.  Bimodal gene expression in noncooperative regulatory systems.

Authors:  Anna Ochab-Marcinek; Marcin Tabaka
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-06       Impact factor: 11.205

3.  Bistable behavior in a model of the lac operon in Escherichia coli with variable growth rate.

Authors:  M Santillán
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

4.  Reaction coordinates for the flipping of genetic switches.

Authors:  Marco J Morelli; Sorin Tanase-Nicola; Rosalind J Allen; Pieter Rein ten Wolde
Journal:  Biophys J       Date:  2008-01-25       Impact factor: 4.033

5.  Extinction and resurrection in gene networks.

Authors:  Daniel Schultz; Aleksandra M Walczak; José N Onuchic; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-25       Impact factor: 11.205

6.  DNA looping provides stability and robustness to the bacteriophage lambda switch.

Authors:  Marco J Morelli; Pieter Rein Ten Wolde; Rosalind J Allen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-01       Impact factor: 11.205

7.  A spatial toggle switch drives boundary formation in development.

Authors:  Oriol Canela-Xandri; Francesc Sagués; Ramón Reigada; Javier Buceta
Journal:  Biophys J       Date:  2008-09-12       Impact factor: 4.033

8.  Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast.

Authors:  Stacie L Bumgarner; Robin D Dowell; Paula Grisafi; David K Gifford; Gerald R Fink
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-30       Impact factor: 11.205

9.  Effects of molecular noise on bistable protein distributions in rod-shaped bacteria.

Authors:  L Wettmann; M Bonny; K Kruse
Journal:  Interface Focus       Date:  2014-12-06       Impact factor: 3.906

10.  Monomeric bistability and the role of autoloops in gene regulation.

Authors:  Stefanie Widder; Javier Macía; Ricard Solé
Journal:  PLoS One       Date:  2009-04-30       Impact factor: 3.240

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